SNP Profiles matching POUND 25 /A

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG
1._POUND_16_/A___	__	AA	CG	TT	__	__	__	GT	__	__	__	__	CC	AG
2._POUND_16_/B___	__	AA	CG	TT	__	__	__	GT	__	__	__	__	CC	AG
3._SCA_19___	CC	AA	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CC	AG
4._SCA_19___	CC	AA	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CC	AG
5._SCA_19___	CC	AA	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CC	AG
6._SCA_19___	CC	AA	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CC	AG
7._SCA_19___	CC	AA	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CC	AG
8._SCA_19___	CC	AA	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CC	AG
9._NA_33___	CC	AG	CC	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG
10._NA_33___	CC	AA	CC	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG
11._SPA_9_[COL]___	CC	AA	CG	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CC	CG	GT	AA	CC	AA	GG	GG	CT	CC
1._POUND_16_/A___	__	__	__	__	CC	CG	GT	__	CC	AA	CG	GG	CT	CC
2._POUND_16_/B___	__	__	__	__	CC	CG	GT	__	CC	AA	CG	GG	CT	CC
3._SCA_19___	CT	AA	GG	CC	CT	GG	GT	AA	CC	AA	GG	GG	CT	CC
4._SCA_19___	CT	AA	GG	CC	CT	GG	GT	AA	CC	AA	GG	GG	CT	CC
5._SCA_19___	CT	AA	GG	CC	CT	GG	GT	AA	CC	AA	GG	GG	CT	CC
6._SCA_19___	CT	AA	GG	CC	CT	GG	GT	AA	CC	AA	GG	GG	CT	CC
7._SCA_19___	CT	AA	GG	CC	CT	GG	GT	AA	CC	AA	GG	GG	CT	CC
8._SCA_19___	CT	AA	GG	CC	CT	GG	GT	AA	CC	AA	GG	GG	CT	CC
9._NA_33___	TT	AA	GG	CC	CC	CG	GG	AG	CT	AA	GG	GG	CT	CC
10._NA_33___	TT	AA	GG	CC	CC	CG	GG	AG	CT	AA	GG	GG	CT	CC
11._SPA_9_[COL]___	TT	AA	GG	CC	CC	CG	GG	AA	CC	AA	GG	GG	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CT	GG	CG	AC	CC	TT	CC	TT	GG	X_X	X_X
1._POUND_16_/A___	AA	__	AA	CT	GG	CG	AC	CC	GT	CC	__	__	X_X	X_X
2._POUND_16_/B___	AA	__	AA	CT	GG	CG	AC	CC	GT	CC	__	__	X_X	X_X
3._SCA_19___	AA	GG	AA	CT	AG	CG	AA	CC	GT	CC	TT	GG	X_X	X_X
4._SCA_19___	AA	GG	AA	CT	AG	CG	AA	CC	GT	CC	TT	GG	X_X	X_X
5._SCA_19___	AA	GG	AA	CT	AG	CG	AA	CC	GT	CC	TT	GG	X_X	X_X
6._SCA_19___	AA	GG	AA	CT	AG	CG	AA	CC	GT	CC	TT	GG	X_X	X_X
7._SCA_19___	AA	GG	AA	CT	AG	CG	AA	CC	GT	CC	TT	GG	X_X	X_X
8._SCA_19___	AA	GG	AA	CT	AG	CG	AA	CC	GT	CC	TT	GG	X_X	X_X
9._NA_33___	AA	GG	AA	CT	AG	CG	AC	CC	GG	CC	TT	GG	X_X	X_X
10._NA_33___	AA	GG	AA	CT	AG	GG	AC	CC	GG	CC	TT	GG	X_X	X_X
11._SPA_9_[COL]___	AA	GG	AA	CT	AA	CG	AC	CT	GG	AC	TT	GG	X_X	X_X

Input profile: POUND_25_/A

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F452 T9

Dapeng Zhang, 2016

1._POUND_16_/A RUQ_26

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._POUND_16_/B RUQ_804

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._SCA_19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3104 9 > FP

Dapeng Zhang, 2016

4._SCA_19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3104 16

Dapeng Zhang, 2016

5._SCA_19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3104 8

Dapeng Zhang, 2016

6._SCA_19 GC-03-004-1-04

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

Mars, 2018

7._SCA_19 GC-03-004-1-04

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

Mars, 2018

8._SCA_19 GC-03-004-1-04

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

Mars, 2018

9._NA_33 RUQ_1577

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._NA_33

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A D371 T2

Dapeng Zhang, 2016

11._SPA_9_[COL]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching POUND 25 /A

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Input profile: POUND_25_/A

1._POUND_16_/A RUQ_26

95.8 % 24 shared markers

2._POUND_16_/B RUQ_804

95.8 % 24 shared markers

3._SCA_19

91.3 % 40 shared markers

4._SCA_19

91.3 % 40 shared markers

5._SCA_19

91.3 % 40 shared markers

6._SCA_19 GC-03-004-1-04

91.3 % 40 shared markers

7._SCA_19 GC-03-004-1-04

91.3 % 40 shared markers

8._SCA_19 GC-03-004-1-04

91.3 % 40 shared markers

9._NA_33 RUQ_1577

90 % 40 shared markers

10._NA_33

90 % 40 shared markers

11._SPA_9_[COL]

90 % 40 shared markers

95.8 %
24 shared markers

95.8 %
24 shared markers

91.3 %
40 shared markers

91.3 %
40 shared markers

91.3 %
40 shared markers

91.3 %
40 shared markers

91.3 %
40 shared markers

91.3 %
40 shared markers

90 %
40 shared markers

90 %
40 shared markers

90 %
40 shared markers