SNP Profiles matching POUND 25 /A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCCAAAGCCGGTT
1._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
2._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
3._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
4._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
5._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
6._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
7._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
8._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
9._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
10._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
11._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
12._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
13._POUND_2_/A___
CCAACCTTTTAATTTTCCAAAGCCGGTT
14._MARPER_28___
CCAACCTT__AATT__CCAAAG__GGTT
15._NA_232___
__AACCTT______TT______CCAG__
16._CRU_100___
__AACCTT______TT______CCGG__
17._MARPER_38___
CCAACGTT__AATT__CCAAAG__GGTT
18._CRU_70___
__AACGTT______TT______CCGG__
19._NA_710___
__AACGTT______TT______CCAG__
20._NA_916___
__AACCTT______TT______CCGG__
21._IMC_27___
__AACGTT______TT______CCAG__
22._NA_756___
__AAGGTT______TT______CCGG__
23._NA_286___
CCAAGGTTTTAATTTTCCAAAACCGGTT
24._NA_286___
CCAAGGTTTTAATTTTCCAAAACCGGTT
25._NA_286___
CCAAGGTTTTAATT__CCAAAACCGGTT
26._NA_286___
CCAAGGTTTTAATT__CCAAAACCGGTT
27._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
28._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
29._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
30._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
31._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
32._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
33._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
34._POUND_5_/C___
CCAAGGTTTT__TTTTCCAAGGCCGGTT
35._MARPER_16___
CC__CCTTTTAATTTTCC__AACCGGTT
36._NA_286___
CCAAGGTTTTACTTTTCCAAAACCGGTT
37._NA_149___
__AAGGTT______TT______CCGG__
38._NA_702___
__AAGGTT______TT______CCGG__
39._POUND_5_/C___
CCAAGGTTTTCCTTTTCCAAGGCCGGTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCGGGGAACCAAGGGGTTCCAA
1._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
2._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
3._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
4._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
5._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
6._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
7._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
8._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
9._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
10._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
11._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
12._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
13._POUND_2_/A___
AAGGCCCCGGGGAACCAAGGGGTTCCAA
14._MARPER_28___
AAGG__CC__GGAACC__GG__TTCCAA
15._NA_232___
______CCGGGG__CCAAGGGGTTCCAA
16._CRU_100___
______CCCGGG__CCAAGGGG__CCAA
17._MARPER_38___
AAGG__CC__GGAACC__GG__CTCCAA
18._CRU_70___
______CCGGGG__CCAAGGGGCTCCAA
19._NA_710___
______CCGGGG__CCAAGGGGTTCCAA
20._NA_916___
______CCCGGG__CCAAGGGGTTCCAA
21._IMC_27___
______CCGGGG__CCAAGGGGTTCCAA
22._NA_756___
______CCGGGG__CCAAGGGGCTCCAA
23._NA_286___
AAGGCCCCGGGGAACCAAGGGGCCCCAA
24._NA_286___
AAGGCCCCGGGGAACCAAGGGGCCCCAA
25._NA_286___
AAGGCCCCGGGGAACCAAGGGGCCCCAA
26._NA_286___
AAGGCCCCGGGGAACCAAGGGGCCCCAA
27._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
28._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
29._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
30._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
31._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
32._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
33._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
34._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
35._MARPER_16___
AAGGCCCCCCGGAACCAAGGGGTTCCAA
36._NA_286___
AAGGCCCCGGGGAACCAAGGGGCCCCAA
37._NA_149___
______CCGGGG__CCAAGGGGCCCCAA
38._NA_702___
______CCGGGG__CCAAGGGGCCCCAA
39._POUND_5_/C___
AAGGCCCCGGGGAACCAAGGGGCTCCAA
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
1._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
2._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
3._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
4._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
5._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
6._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
7._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
8._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
9._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
10._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
11._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
12._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
13._POUND_2_/A___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
14._MARPER_28___
GG__CCAA____GG__TT__X_XX_XX_XX_X
15._NA_232___
__AACCAAAACCGGCC____X_XX_XX_XX_X
16._CRU_100___
__AACCAAAACCGGCC____X_XX_XX_XX_X
17._MARPER_38___
GG__CCAA____GG__TT__X_XX_XX_XX_X
18._CRU_70___
__AACCAAAACCGGCC____X_XX_XX_XX_X
19._NA_710___
__AACCAAAACCGGCC____X_XX_XX_XX_X
20._NA_916___
__AACCAGAACCGGCC____X_XX_XX_XX_X
21._IMC_27___
__AACCAGAACCGGCC____X_XX_XX_XX_X
22._NA_756___
__AACCAAAACCGGCC____X_XX_XX_XX_X
23._NA_286___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
24._NA_286___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
25._NA_286___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
26._NA_286___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
27._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
28._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
29._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
30._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
31._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
32._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
33._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
34._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
35._MARPER_16___
GGAACCGGAACCGGCCTTGGX_XX_XX_XX_X
36._NA_286___
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
37._NA_149___
__AACCAAAACCGGCC____X_XX_XX_XX_X
38._NA_702___
__AACCAAAACCGGCC____X_XX_XX_XX_X
39._POUND_5_/C___
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X

Input profile: POUND_25_/A

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

1._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016

2._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

3._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

4._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

5._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

6._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

11._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

12._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

13._POUND_2_/A

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

14._MARPER_28

identical
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

15._NA_232 RUQ_1504

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._CRU_100 RUQ_877

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._MARPER_38

96.2 %
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

18._CRU_70 RUQ_897

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._NA_710 RUQ_1588

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_916 RUQ_1334

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_27 RUQ_515

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_756 RUQ_468

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_286

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

24._NA_286 GC-01-101-5-18

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

25._NA_286

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016

26._NA_286 GC-01-101-5-18

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

27._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016

28._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

29._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

30._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

31._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

34._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

35._MARPER_16

93.1 %
36 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 750A
 Dapeng Zhang, 2014

36._NA_286

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

37._NA_149 RUQ_801

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._NA_702 RUQ_1587

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

39._POUND_5_/C

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25