SNP Profiles matching LCTEEN 37/F

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 1234567891011121314
_Input profile
GGATAAGGTTCCCCAGCCATAAAGACCC
1._RUQ_153
GGATAAGGTTCCCCAGCCATAAAGACCC
2._LCT_EEN_37_/F
CGATAAGGTTCC-AGCCATAAAGACCC
3._RUQ_153
__AAGGTTCCCCAGCC-_AGACCC
4._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
5._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
6._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
7._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
8._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
9._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
10._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
11._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
12._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
13._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
14._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
15._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
16._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
17._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
18._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
19._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
20._GC-08-160-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
21._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
22._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
23._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
24._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
25._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
26._POUND_4_/A
CGATAAGGTTCCCCAGCCATAAAGACCC
27._GC-08-159-4-02
CGATAAGGTTCCCCAGCCATAAAGACCC
28._LCT_EEN_37_/F
CGATAAGG_CCCCAGCCATAAAGACCC
29._GC-02-027-4-03
CGATAAGG_CCCCAGCCATAAAGACCC
30._LCT_EEN_73_/D
CGATACGGTTCC-AGCCATAAAGCCCC
 1516171819202122232425262728
_Input profile
GGGGCCTTAAGGCGTTTTCGAACTAACC
1._RUQ_153
GGGGCCTTAAGGCGTTTTCGAACTAACC
2._LCT_EEN_37_/F
GGGGCCTTAAGGCGTTTTCGAACTAACC
3._RUQ_153
GGCGCCTT_GGCGTT____AACC
4._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
5._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
6._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
7._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
8._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
9._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
10._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
11._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
12._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
13._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
14._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
15._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
16._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
17._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
18._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
19._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
20._GC-08-160-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
21._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
22._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
23._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
24._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
25._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
26._POUND_4_/A
GGGGCCTTGGGGCGTTTTCGAACTAACC
27._GC-08-159-4-02
GGGGCCTTGGGGCGTTTTCGAACTAACC
28._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
29._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
30._LCT_EEN_73_/D
GGGGCCTTAAGGCGTTCTCGATCTAACC
 293031323334353637383940  
_Input profile
GGATCCTTGGTTCCCTCTCGGGCCX_XX_X
1._RUQ_153
GGATCCTTGGTTCCCTCTCGGGCCX_XX_X
2._LCT_EEN_37_/F
GGAT-TTGGTTCCCTCTCGGG-X_XX_X
3._RUQ_153
____GG___CTCGGG_X_XX_X
4._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
5._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
6._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
7._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
8._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
9._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
10._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
11._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
12._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
13._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
14._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
15._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
16._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
17._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
18._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
19._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
20._GC-08-160-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
21._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
22._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
23._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
24._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
25._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
26._POUND_4_/A
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
27._GC-08-159-4-02
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
28._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
29._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
30._LCT_EEN_73_/D
GGAA-TTGG-CC-CTCCGG-X_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F RUQ_153

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._LCT_EEN_37_/F GC-08-160-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._POUND_4_/A

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 4
 Dapeng Zhang, 2016

27._POUND_4_/A GC-08-159-4-02

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._LCT_EEN_37_/F

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F GC-02-027-4-03

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._LCT_EEN_73_/D

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D294 T8
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520