SNP Profiles matching POUND 25 /A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTTTAATTGTCCCCAAAGCCAG
1._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
2._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
3._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
4._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
5._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
6._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
9._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
10._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
11._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
12._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
13._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
14._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
15._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
16._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
17._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
18._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
19._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
20._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
21._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
22._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
23._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
24._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
25._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
29._NA_33___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
30._NA_33___
CCAGCCTTTTAATT__CCCCAAAGCCAG
31._NA_33___
CCAGCCTTTTAATT__CCCCAAAGCCAG
32._NA_33___
CCAGCCTTTTACTTGTCCCCAAAGCCAG
33._NA_33___
CCAGCCTTTTACTTGTCCCCAAAGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCCCTGGGGCTACGGGGCTCCAG
1._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
2._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
3._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
4._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
5._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
6._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
7._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
8._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
9._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
10._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
11._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
12._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
13._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
14._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
15._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
16._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
17._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
18._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
19._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
20._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
21._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
22._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
23._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
24._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
25._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
26._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
27._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
28._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
29._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
30._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
31._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
32._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
33._NA_33___
CTAACGCCCTGGGGCTACGGGGCTCCAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
1._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
2._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
3._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
4._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
5._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
6._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
7._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
8._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
9._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
10._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
11._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
12._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
13._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
14._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
15._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
16._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
17._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
18._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
19._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
20._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
21._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
22._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
23._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
24._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
25._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
26._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
27._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
28._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
29._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
30._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
31._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
32._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
33._NA_33___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

9._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

10._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

11._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

12._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

13._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

14._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

15._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

16._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

17._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

18._NA_33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016

19._NA_33 GC-01-6-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

20._NA_33 GC-01-6-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

21._NA_33 GC-01-6-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

22._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

23._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

24._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

25._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

26._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

27._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

28._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

29._NA_33 GC-01-006-1-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

30._NA_33

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

31._NA_33 GC-01-6-1-06

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

32._NA_33

98.7 %
39 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

33._NA_33

98.7 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25