SNP Profiles matching EET 233

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
1._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
2._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
3._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
4._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
5._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
6._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
7._GC-05-085-2-36	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
8._GC-05-085-2-36	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
9._GC-05-085-2-36	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
10._GC-05-149-4-02	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
11._GC-05-178-4-31	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
12._GC-05-178-4-31	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
13._GC-05-178-4-31	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
14._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
15._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
16._EET_233_[ECU]	CT	GG	CC	CT	CC	CT	_	TT	CC	TT	GG	CC	AG	TT
17._GC-05-085-2-36	CT	GG	CC	CT	CC	CT	_	TT	CC	TT	GG	CC	AG	TT
18._GC-05-085-2-36	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
19._GC-05-149-4-02	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CC	AG	TT
20._RUQ_1517	CT	GG	CC	CT	CC	CT	GG	TT	CC	TT	GG	CT	AG	TT
21._RUQ_1517	_	GG	CC	CT	_	_	GG	_	_	_	_	CC	AG	_
22._RUQ_1438	_	GG	CG	CT	_	_	GT	_	_	_	_	CC	AG	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
1._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
2._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
3._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
4._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
5._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
6._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
7._GC-05-085-2-36	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
8._GC-05-085-2-36	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
9._GC-05-085-2-36	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
10._GC-05-149-4-02	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
11._GC-05-178-4-31	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
12._GC-05-178-4-31	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
13._GC-05-178-4-31	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
14._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
15._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
16._EET_233_[ECU]	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
17._GC-05-085-2-36	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
18._GC-05-085-2-36	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
19._GC-05-149-4-02	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
20._RUQ_1517	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC	AG
21._RUQ_1517	_	_	_	TT	GG	GG	_	CT	CC	GG	GT	CT	AC	AG
22._RUQ_1438	_	_	_	TT	GG	GG	_	CT	CC	CG	GT	CT	AC	AG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
1._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
2._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
3._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
4._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
5._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
6._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
7._GC-05-085-2-36	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
8._GC-05-085-2-36	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
9._GC-05-085-2-36	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
10._GC-05-149-4-02	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
11._GC-05-178-4-31	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
12._GC-05-178-4-31	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
13._GC-05-178-4-31	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
14._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	_	CC	X_X	X_X	X_X	X_X
15._EET_233_[ECU]	AG	TT	CC	_	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
16._EET_233_[ECU]	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
17._GC-05-085-2-36	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
18._GC-05-085-2-36	AG	TT	CC	_	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
19._GC-05-149-4-02	AG	TT	CC	AA	CC	CC	CT	GT	_	CC	X_X	X_X	X_X	X_X
20._RUQ_1517	AG	TT	CC	AA	CC	CC	CT	GT	AA	CC	X_X	X_X	X_X	X_X
21._RUQ_1517	_	TT	CC	AA	CC	CC	CT	GT	_	_	X_X	X_X	X_X	X_X
22._RUQ_1438	_	TT	CC	AA	CC	CC	TT	GT	_	_	X_X	X_X	X_X	X_X

Input profile: EET_233_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 5236 3 > FP

Dapeng Zhang, 2016

1._EET_233_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 3 > FP

Dapeng Zhang, 2016

2._EET_233_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 5

Dapeng Zhang, 2016

3._EET_233_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 4

Dapeng Zhang, 2016

4._EET_233_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5402 1 > FP

Dapeng Zhang, 2016

5._EET_233_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 4

Dapeng Zhang, 2016

6._EET_233_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 2 > FP

Dapeng Zhang, 2016

7._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL2

Notes: PL2 FP2

8._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL3

Notes: PL3 FP3

9._EET_233_[ECU] GC-05-085-2-36

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._EET_233_[ECU] GC-05-149-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP2

11._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

13._EET_233_[ECU] GC-05-178-4-31

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._EET_233_[ECU]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5402 2

Dapeng Zhang, 2016

15._EET_233_[ECU]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 5 > FP

Dapeng Zhang, 2016

16._EET_233_[ECU]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL1

Notes: PL1 FP1

18._EET_233_[ECU] GC-05-085-2-36

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL5

Notes: PL5 FP4

19._EET_233_[ECU] GC-05-149-4-02

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

20._EET_233_[ECU] RUQ_1517

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

21._EET_233_[ECU] RUQ_1517

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._SJ_1_/40_[POU] RUQ_1438

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP32	38	TcSNP25