SNP Profiles matching MA-12

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCCCC
1._MA_15_[BRA]___
AAAACTAAGGGGCCCCCTCCGGTTCCCC
2._MA_15_[BRA]___
AAAACTAAGGGGCCCCCTCCGGTTCCCC
3._MA_15_[BRA]___
AAAACTAAGGGGCCCCCTCCGGTTCCCC
4._MA_15_[BRA]___
AAAACTAA________CTCCGG__CC__
5._MA_15_[BRA]___
AAAACTAA________CTCCGG__CC__
6._MA_15_[BRA]___
AAAACTAA________CTCCGG__CC__
7._MA_15_[BRA]___
AAAACTAA________CTCCGG__CC__
8._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
9._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
10._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
11._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
12._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
13._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
14._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
15._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
16._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
17._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
18._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
19._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
20._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
21._MA_12_[BRA]___
AACCCCAA________CTCCGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGGGCCGGCTAATTGGTTAACCCG
1._MA_15_[BRA]___
AACCAGGGCCGGCTAATTGGTTAACCCG
2._MA_15_[BRA]___
AACCAGGGCCGGCTAATTGGTTAACCCG
3._MA_15_[BRA]___
AACCAGGGCCGGCTAATTGGTTAACCCG
4._MA_15_[BRA]___
____AG____GG________TTAA__CG
5._MA_15_[BRA]___
____AG____GG________TTAA__CG
6._MA_15_[BRA]___
____AG____GG________TTAA__CG
7._MA_15_[BRA]___
____AG____GG________TTAA__CG
8._MA_12_[BRA]___
____AA____GG________TTAA__CG
9._MA_12_[BRA]___
____AA____GG________TTAA__CG
10._MA_12_[BRA]___
____AA____GG________TTAA__CG
11._MA_12_[BRA]___
____AA____GG________TTAA__CG
12._MA_12_[BRA]___
____AA____GG________TTAA__CG
13._MA_12_[BRA]___
____AA____GG________TTAA__CG
14._MA_12_[BRA]___
____AA____GG________TTAA__CG
15._MA_12_[BRA]___
____AA____GG________TTAA__CG
16._MA_12_[BRA]___
____AA____GG________TTAA__CG
17._MA_12_[BRA]___
____AA____GG________TTAA__CG
18._MA_12_[BRA]___
____AA____GG________TTAA__CG
19._MA_12_[BRA]___
____AA____GG________TTAA__CG
20._MA_12_[BRA]___
____AA____GG________TTAA__CG
21._MA_12_[BRA]___
____AA____GG________TTAA__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACGCCAATTGGTTAACCAGCC
1._MA_15_[BRA]___
AATTGGAACGCCAATTGGTTAACCAGCC
2._MA_15_[BRA]___
AATTGGAACGCCAATTGGTTAACCAGCC
3._MA_15_[BRA]___
AATTGGAACGCCAATTGGTTAACCAGCC
4._MA_15_[BRA]___
AA______CG__AATT____AA______
5._MA_15_[BRA]___
AA______CG__AATT____AA______
6._MA_15_[BRA]___
AA______CG__AATT____AA______
7._MA_15_[BRA]___
AA______CG__AATT____AA______
8._MA_12_[BRA]___
AA______CC__AATT____AA______
9._MA_12_[BRA]___
AA______CC__AATT____AA______
10._MA_12_[BRA]___
AA______CC__AATT____AA______
11._MA_12_[BRA]___
AA______CC__AATT____AA______
12._MA_12_[BRA]___
AA______CC__AATT____AA______
13._MA_12_[BRA]___
AA______CC__AATT____AA______
14._MA_12_[BRA]___
AA______CC__AATT____AA______
15._MA_12_[BRA]___
AA______CC__AATT____AA______
16._MA_12_[BRA]___
AA______CC__AATT____AA______
17._MA_12_[BRA]___
AA______CC__AATT____AA______
18._MA_12_[BRA]___
AA______CC__AATT____AA______
19._MA_12_[BRA]___
AA______CC__AATT____AA______
20._MA_12_[BRA]___
AA______CC__AATT____AA______
21._MA_12_[BRA]___
AA______CC__AATT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCCCGGAGGTTTCCCC
1._MA_15_[BRA]___
GGTTTTAAGGAACCCCGGAGGTTTCCCC
2._MA_15_[BRA]___
GGTTTTAAGGAACCCCGGAGGTTTCCCC
3._MA_15_[BRA]___
GGTTTTAAGGAACCCCGGAGGTTT__CC
4._MA_15_[BRA]___
____TT__________________CCCC
5._MA_15_[BRA]___
____TT__________________CCCC
6._MA_15_[BRA]___
____TT____________________CC
7._MA_15_[BRA]___
____TT__________________CCCC
8._MA_12_[BRA]___
____TT__________________CCCC
9._MA_12_[BRA]___
____TT__________________CCCC
10._MA_12_[BRA]___
____TT__________________CCCC
11._MA_12_[BRA]___
____TT__________________CCCC
12._MA_12_[BRA]___
____TT__________________CCCC
13._MA_12_[BRA]___
____TT__________________CCCC
14._MA_12_[BRA]___
____TT__________________CCCC
15._MA_12_[BRA]___
____TT__________________CCCC
16._MA_12_[BRA]___
____TT__________________CCCC
17._MA_12_[BRA]___
____TT__________________CCCC
18._MA_12_[BRA]___
____TT__________________CCCC
19._MA_12_[BRA]___
____TT__________________CCCC
20._MA_12_[BRA]___
____TT__________________CCCC
21._MA_12_[BRA]___
____TT__________________CC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCTTCCAAGGGGCCAGTTGGGGCT
1._MA_15_[BRA]___
TTAGCCTTCCAAGGGGCCAGTTGGGGCT
2._MA_15_[BRA]___
TTAGCCTTCCAAGGGGCCAGTTGGGGCT
3._MA_15_[BRA]___
TTAGCCTTCCAAGGGGCCAGTTGGGGCT
4._MA_15_[BRA]___
____CC__CCAAGG__CCAGTTGG____
5._MA_15_[BRA]___
____CC__CCAAGG__CCAGTTGG____
6._MA_15_[BRA]___
____CC__CCAAGG__CCAGTTGG____
7._MA_15_[BRA]___
____CC__CCAAGG__CCAGTTGG____
8._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
9._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
10._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
11._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
12._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
13._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
14._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
15._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
16._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
17._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
18._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
19._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
20._MA_12_[BRA]___
____CC__CCAAGG__CCAGTTGT____
21._MA_12_[BRA]___
________CCAAGG__CCAGTTGT____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCCCAACCAAAACCGGCCAAACCC
1._MA_15_[BRA]___
CCAACCCCAACCAAAACCGGCCAAACCC
2._MA_15_[BRA]___
CCAACCCCAACCAAAACCGGCCAAACCC
3._MA_15_[BRA]___
CCAACCCCAACCAAAACCGGCCAAACCC
4._MA_15_[BRA]___
__AACC__________CCGG______CC
5._MA_15_[BRA]___
__AACC__________CCGG______CC
6._MA_15_[BRA]___
__AACC__________CCGG______CC
7._MA_15_[BRA]___
__AACC__________CCGG______CC
8._MA_12_[BRA]___
__AACC__________CCGG______CC
9._MA_12_[BRA]___
__AACC__________CCGG______CC
10._MA_12_[BRA]___
__AACC__________CCGG______CC
11._MA_12_[BRA]___
__AACC__________CCGG______CC
12._MA_12_[BRA]___
__AACC__________CCGG______CC
13._MA_12_[BRA]___
__AACC__________CCGG______CC
14._MA_12_[BRA]___
__AACC__________CCGG______CC
15._MA_12_[BRA]___
__AACC__________CCGG______CC
16._MA_12_[BRA]___
__AACC__________CCGG______CC
17._MA_12_[BRA]___
__AACC__________CCGG______CC
18._MA_12_[BRA]___
__AACC__________CCGG______CC
19._MA_12_[BRA]___
__AACC__________CCGG______CC
20._MA_12_[BRA]___
__AACC__________CCGG______CC
21._MA_12_[BRA]___
__AACC__________CCGG______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTTTTTAACCTTTTTTTTGGX_XX_XX_XX_X
1._MA_15_[BRA]___
CTTTTTAACCTTTTTTTTGGX_XX_XX_XX_X
2._MA_15_[BRA]___
CTTTTTAACC__TTTTTTGGX_XX_XX_XX_X
3._MA_15_[BRA]___
CTTTTTAACCTTTTTTTTGGX_XX_XX_XX_X
4._MA_15_[BRA]___
CTTT__AA__TTTTTT____X_XX_XX_XX_X
5._MA_15_[BRA]___
CTTT__AA__TTTTTT____X_XX_XX_XX_X
6._MA_15_[BRA]___
CTTT__AA__TTTTTT____X_XX_XX_XX_X
7._MA_15_[BRA]___
CTTT__AA____TTTT____X_XX_XX_XX_X
8._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
9._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
10._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
11._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
12._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
13._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
14._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
15._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
16._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
17._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
18._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
19._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
20._MA_12_[BRA]___
CTTT__AA__CTTTTT____X_XX_XX_XX_X
21._MA_12_[BRA]___
CT____AA__CTTTTT____X_XX_XX_XX_X

Input profile: MA_15_[BRA] GC-01-060-3-15

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._MA_15_[BRA] GC-01-060-3-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._MA_15_[BRA] GC-01-060-3-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._MA_15_[BRA] GC-01-060-3-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._MA_15_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 1 > FP
 Dapeng Zhang, 2016

5._MA_15_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 2
 Dapeng Zhang, 2016

6._MA_15_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 13
 Dapeng Zhang, 2016

7._MA_15_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 5
 Dapeng Zhang, 2016

8._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

9._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

10._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

11._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

12._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

13._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

14._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

15._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

16._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

17._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

18._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

19._MA_12_[BRA]

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

20._MA_12_[BRA]

91.3 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

21._MA_12_[BRA]

90.5 %
37 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240