SNP Profiles matching PA 195 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCCCCGGGGCTCCCCCCGGTTCCTT
1._PA_150_[PER]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
2._PA_150_[PER]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
3._PA_150_[PER]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
4._PA_150_[PER]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
5._EET_272_[ECU]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
6._EET_272_[ECU]___
AAACCCCC________CCCCGG__CC__
7._PA_150_[PER]___
AAACCCCC________CCCCGG__CC__
8._PA_150_[PER]___
AAACCCCC________CCCCGG__CC__
9._PA_150_[PER]___
AAACCCCC________CCCCGG__CC__
10._PA_150_[PER]___
AAACCCCC________CCCCGG__CC__
11._EET_272_[ECU]___
AAACCCCC________CCCCGG__CC__
12._MOQ_6_/95___
____CCCC____TT__CC____TTCC__
13._EQX_/O_[CHA]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
14._EQX_/O_[CHA]___
AAACCCCC________CCCCGG__CC__
15._PA_56_[PER]___
____CTCC____CT__CC____TTCC__
16._PA_124_[PER]___
____CCCC____CT__CC____TTCC__
17._CRUZ_7_/14___
____CTCC____CT__CC____TTCC__
18._PA_195_[PER]___
____CCCC____CT__CC____TTCC__
19._PA_195_[PER]___
____CCCC____CT__CC____TTCC__
20._PA_71_[PER]___
____CTCC____CT__CC____TTCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGCGCCCCTTAATTGGATAACCGG
1._PA_150_[PER]___
AACCAGCGCCCCTTAATTGGATAACCGG
2._PA_150_[PER]___
AACCAGCGCCCCTTAATTGGATAACCGG
3._PA_150_[PER]___
AACCAGCGCCCCTTAATTGGATAACCGG
4._PA_150_[PER]___
AACCAGCGCCCCTTAATTGGATAACCGG
5._EET_272_[ECU]___
AACCAGCGCCCCTTAATTGGATAACCGG
6._EET_272_[ECU]___
____AG____CC________ATAA__GG
7._PA_150_[PER]___
____AG____CC________ATAA__GG
8._PA_150_[PER]___
____AG____CC________ATAA__GG
9._PA_150_[PER]___
____AG____CC________ATAA__GG
10._PA_150_[PER]___
____AG____CC________ATAA__GG
11._EET_272_[ECU]___
____AG____CC________ATAA__GG
12._MOQ_6_/95___
________CC________GG__AACCGG
13._EQX_/O_[CHA]___
AACCAGCCCCCCTTAATTGGATAACCGG
14._EQX_/O_[CHA]___
____AG____CC________ATAA__GG
15._PA_56_[PER]___
________CC________GG__AACCGG
16._PA_124_[PER]___
________CC________GG__AACCGG
17._CRUZ_7_/14___
________CC________GG__AACCGG
18._PA_195_[PER]___
________CC________GG__AACCGG
19._PA_195_[PER]___
________CC________GG__AACCGG
20._PA_71_[PER]___
________CC________GG__AACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGCGCCAGGGGGTTGGCTAGCC
1._PA_150_[PER]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
2._PA_150_[PER]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
3._PA_150_[PER]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
4._PA_150_[PER]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
5._EET_272_[ECU]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
6._EET_272_[ECU]___
AA______CG__AGGG____GG______
7._PA_150_[PER]___
AA______CG__AGGG____GG______
8._PA_150_[PER]___
AA______CG__AGGG____GG______
9._PA_150_[PER]___
AA______CG__AGGG____GG______
10._PA_150_[PER]___
AA______CG__AGGG____GG______
11._EET_272_[ECU]___
AA______CG__AGGG____GG______
12._MOQ_6_/95___
______GGCGCCAGGG____GGCT____
13._EQX_/O_[CHA]___
AATTGTGGCGCC__GGGGTTGGCCAGCC
14._EQX_/O_[CHA]___
AA______CG____GG____GG______
15._PA_56_[PER]___
______GGCGCCAGGG____GGTT____
16._PA_124_[PER]___
______GGCGCCAGGG____GGTT____
17._CRUZ_7_/14___
______GGCGCCAGGG____AGTT____
18._PA_195_[PER]___
______GGCGCCAGGG____GGTT____
19._PA_195_[PER]___
______GGCGCCAGGG____GGTT____
20._PA_71_[PER]___
______GGCGCCAGGG____AGTT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACCGGAAGGTTCCCTTT
1._PA_150_[PER]___
GGTTCTAAGGAACCGGAAGGTTCCCTTT
2._PA_150_[PER]___
GGTTCTAAGGAACCGGAAGGTTCCCTTT
3._PA_150_[PER]___
GGTTCTAAGGAACCGGAAGGTTCCCTTT
4._PA_150_[PER]___
GGTTCTAAGGAACCGGAAGGTTCCCTTT
5._EET_272_[ECU]___
GGTTCTAAGGAACCGGAAGGTTCCCTTT
6._EET_272_[ECU]___
____CT________________CCCT__
7._PA_150_[PER]___
____CT________________CCCT__
8._PA_150_[PER]___
____CT________________CCCT__
9._PA_150_[PER]___
____CT________________CCCT__
10._PA_150_[PER]___
____CT________________CCCT__
11._EET_272_[ECU]___
____CT________________CCCT__
12._MOQ_6_/95___
GGTT____GG__________TTCC__TT
13._EQX_/O_[CHA]___
GGTTCCAAGGAACCGGAAGGTTCCCCTT
14._EQX_/O_[CHA]___
____CC________________CCCC__
15._PA_56_[PER]___
GGTT____GG__________CTCC__TT
16._PA_124_[PER]___
GGTT____GG__________TTCC__TT
17._CRUZ_7_/14___
GGTT____GG__________CTCC__TT
18._PA_195_[PER]___
GGTT____GG__________TTCC__TT
19._PA_195_[PER]___
GGTT____GG__________TTCC__TT
20._PA_71_[PER]___
GGTT____GG__________CTCC__TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
1._PA_150_[PER]___
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
2._PA_150_[PER]___
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
3._PA_150_[PER]___
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
4._PA_150_[PER]___
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
5._EET_272_[ECU]___
GGCCCCCC__GGGGCCAGGTGGAGTTCC
6._EET_272_[ECU]___
__CC__CCAAGG__CCAGGTGG______
7._PA_150_[PER]___
__CC__CCAAGG__CCAGGTGG______
8._PA_150_[PER]___
__CC__CCAAGG__CCAGGTGG______
9._PA_150_[PER]___
__CC__CCAAGG__CCAGGTGG______
10._PA_150_[PER]___
__CC__CCAAGG__CCAGGTGG______
11._EET_272_[ECU]___
__CC__CC__GG__CCAGGTGG______
12._MOQ_6_/95___
__CCCCCCAC__GGCCAGGTGGAG____
13._EQX_/O_[CHA]___
GGCCCCCCCCGGGGCCAGGTGGAGTTCC
14._EQX_/O_[CHA]___
__CC__CCCCGG__CCAGGTGG______
15._PA_56_[PER]___
__CCCCCTAC__GGCCAGGTGGAG____
16._PA_124_[PER]___
GGCCCCCCCC__GGACGGGGGGAG____
17._CRUZ_7_/14___
__CCCTCCAA__GGACAGGTGGGG____
18._PA_195_[PER]___
__CCCCCCCC__GGACGGGGGGAG____
19._PA_195_[PER]___
__CCCCCCCC__GGACGGGGGGAG____
20._PA_71_[PER]___
__CCCTCCAA__GGACAGGTGGGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AGCTCCAGACCCAAACGGCCTTAATTCT
1._PA_150_[PER]___
AGCTCCAGACCCAAACGGCCTTAATTCT
2._PA_150_[PER]___
AGCTCCAGACCCAAACGGCCTTAATTCT
3._PA_150_[PER]___
AGCTCCAGACCCAAACGGCCTTAATTCT
4._PA_150_[PER]___
AGCTCCAGACCCAAACGGCCTTAATTCT
5._EET_272_[ECU]___
AGCTCCAGACCCAAACGGCCTTAATTCT
6._EET_272_[ECU]___
AGCT__________ACGG______TTCT
7._PA_150_[PER]___
AGCT__________ACGG______TTCT
8._PA_150_[PER]___
AGCT__________ACGG______TTCT
9._PA_150_[PER]___
AGCT__________ACGG______TTCT
10._PA_150_[PER]___
AGCT__________ACGG______TTCT
11._EET_272_[ECU]___
AGCT__________ACGG______TTCT
12._MOQ_6_/95___
______________ACGG____AATT__
13._EQX_/O_[CHA]___
AGCTCCAGAACCAAACGGCCTTAATTCT
14._EQX_/O_[CHA]___
AGCT__________ACGG______TTCT
15._PA_56_[PER]___
______________ACCG____AATT__
16._PA_124_[PER]___
______________AACG____AATT__
17._CRUZ_7_/14___
______________ACCG____AATT__
18._PA_195_[PER]___
______________AACG____AATT__
19._PA_195_[PER]___
______________AACG____AATT__
20._PA_71_[PER]___
______________ACCG____AATT__
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
1._PA_150_[PER]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
2._PA_150_[PER]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
3._PA_150_[PER]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_150_[PER]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
5._EET_272_[ECU]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
6._EET_272_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_150_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._PA_150_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_150_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_150_[PER]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._EET_272_[ECU]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._MOQ_6_/95___
____AACCCCTT______X_XX_XX_XX_XX_X
13._EQX_/O_[CHA]___
CCTTAACCCCTTTTAAGGX_XX_XX_XX_XX_X
14._EQX_/O_[CHA]___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
15._PA_56_[PER]___
____AACCCCTT______X_XX_XX_XX_XX_X
16._PA_124_[PER]___
____AACCCCTT______X_XX_XX_XX_XX_X
17._CRUZ_7_/14___
____AACCCCTT______X_XX_XX_XX_XX_X
18._PA_195_[PER]___
____AACCCCTT______X_XX_XX_XX_XX_X
19._PA_195_[PER]___
____AACCCCTT______X_XX_XX_XX_XX_X
20._PA_71_[PER]___
____AACCCCTT______X_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

4._PA_150_[PER] GC-01-034-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

7._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

8._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

9._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

10._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

12._MOQ_6_/95 RUQ_1436

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA] GC-07-077-4-21

96.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EQX_/O_[CHA]

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

15._PA_56_[PER] RUQ_32

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_124_[PER] RUQ_1576

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240