SNP Profiles matching IMC 2

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	TT	TT
1._IMC_2___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	TT	TT
2._IMC_2___	AA	CC	CC	AC	GG	GG	CC	CC	CC	__	GG	TT	TT	TT
3._IMC_2___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	TT	TT
4._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	GG	__	TT	__
5._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	GG	__	TT	__
6._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	GG	__	TT	__
7._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	__	GG	__	TT	__
8._IMC_2___	AA	CC	CC	AC	__	__	__	__	CC	CC	AG	__	CT	__
9._IMC_2___	__	__	CC	AC	__	__	TT	__	CC	__	__	TT	TT	__
10._IMC_67___	AA	CC	CC	AC	__	GG	CC	CC	CC	CC	GG	TT	CT	TT
11._IMC_67___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
12._IMC_67___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
13._EET_233_[ECU]___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
14._EET_233_[ECU]___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
15._EET_233_[ECU]___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
16._EET_233_[ECU]___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
17._IMC_67___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
18._EET_233_[ECU]___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
19._EET_233_[ECU]___	AA	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT
20._EET_233_[ECU]___	__	CC	CC	AC	GG	GG	CC	CC	CC	CC	GG	TT	CT	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC	CC
1._IMC_2___	AA	AA	AA	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC	CC
2._IMC_2___	AA	AA	AA	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC	CC
3._IMC_2___	AA	AA	AA	CG	CC	GG	CC	AA	TT	GG	TT	AT	CC	CC
4._IMC_2___	__	__	__	__	__	GG	__	__	__	__	TT	AT	__	CC
5._IMC_2___	__	__	__	__	__	GG	__	__	__	__	TT	AT	__	CC
6._IMC_2___	__	__	__	__	__	GG	__	__	__	__	TT	AT	__	CC
7._IMC_2___	__	__	__	__	__	GG	__	__	__	__	TT	AT	__	CC
8._IMC_2___	__	__	__	__	__	GG	__	__	__	__	TT	AT	__	CC
9._IMC_2___	__	__	__	__	CC	__	__	__	__	GG	__	AT	CC	CC
10._IMC_67___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	__	CC	CC
11._IMC_67___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	__	CC	CC
12._IMC_67___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC
13._EET_233_[ECU]___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC
14._EET_233_[ECU]___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC
15._EET_233_[ECU]___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC
16._EET_233_[ECU]___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC
17._IMC_67___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC
18._EET_233_[ECU]___	AA	AA	__	CG	CC	GG	CT	AA	__	GG	TT	AA	CC	CC
19._EET_233_[ECU]___	AA	AA	__	CG	__	GG	CT	AA	TT	GG	TT	AA	CC	CC
20._EET_233_[ECU]___	AA	AA	__	CG	CC	GG	CT	AA	TT	GG	TT	AA	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG	CC
1._IMC_2___	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG	CC
2._IMC_2___	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG	CC
3._IMC_2___	AT	TT	GG	GG	GG	CC	AA	TT	GG	TT	AG	CT	GG	CC
4._IMC_2___	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__	__
5._IMC_2___	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__	__
6._IMC_2___	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__	__
7._IMC_2___	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__	__
8._IMC_2___	AT	__	__	__	GG	__	AA	TT	__	__	AG	__	__	__
9._IMC_2___	__	__	__	GG	CG	CC	AA	TT	__	__	AG	CT	__	__
10._IMC_67___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
11._IMC_67___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
12._IMC_67___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
13._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
14._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
15._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
16._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
17._IMC_67___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
18._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
19._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC
20._EET_233_[ECU]___	AA	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT	CC
1._IMC_2___	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT	CC
2._IMC_2___	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT	CC
3._IMC_2___	GG	TT	TT	AG	AG	AA	CC	CC	GG	AG	GT	TT	CT	CC
4._IMC_2___	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
5._IMC_2___	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
6._IMC_2___	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
7._IMC_2___	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
8._IMC_2___	__	__	TT	__	__	__	__	__	__	__	__	__	CT	CC
9._IMC_2___	GG	TT	__	__	AG	__	__	__	__	__	__	CT	CT	__
10._IMC_67___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
11._IMC_67___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
12._IMC_67___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
13._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
14._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
15._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
16._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
17._IMC_67___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
18._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
19._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC
20._EET_233_[ECU]___	GG	TT	TT	GG	AA	AA	CC	CC	GG	AG	GT	TT	CT	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG	TT
1._IMC_2___	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG	TT
2._IMC_2___	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG	TT
3._IMC_2___	TT	GG	CC	CC	TT	AC	CG	GG	CC	AG	GT	GT	GG	TT
4._IMC_2___	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__	__
5._IMC_2___	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__	__
6._IMC_2___	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__	__
7._IMC_2___	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__	__
8._IMC_2___	__	__	CC	__	TT	AC	CG	__	CC	AG	GT	GT	__	__
9._IMC_2___	TT	__	CC	CC	TT	AC	__	GG	CC	AG	GT	GT	GG	__
10._IMC_67___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
11._IMC_67___	TT	__	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
12._IMC_67___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
13._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
14._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
15._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
16._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
17._IMC_67___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
18._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
19._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT
20._EET_233_[ECU]___	TT	GG	CG	CC	TT	AC	GG	GG	CC	AG	GT	GG	GG	TT

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC	CC
1._IMC_2___	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC	CC
2._IMC_2___	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC	CC
3._IMC_2___	CG	AA	CC	AC	AG	AC	AC	AA	AC	GG	CC	AT	AC	CC
4._IMC_2___	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__	CC
5._IMC_2___	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__	CC
6._IMC_2___	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__	CC
7._IMC_2___	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__	CC
8._IMC_2___	__	AA	CC	__	__	__	__	__	AC	GG	__	__	__	CC
9._IMC_2___	__	__	__	__	__	__	__	__	AC	GG	__	__	AC	CC
10._IMC_67___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
11._IMC_67___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
12._IMC_67___	CG	__	CC	AA	__	AC	AC	AG	AC	GG	CC	AT	CC	CC
13._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
14._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
15._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
16._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
17._IMC_67___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
18._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
19._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	AT	CC	CC
20._EET_233_[ECU]___	CG	AA	CC	AA	AA	AC	AC	AG	AC	GG	CC	__	CC	CC

	85	86	87	88	89	90	91	92	93	94
_Input profile	TT	CC	CC	AG	CC	CT	TT	CT	TT	GG	X_X	X_X	X_X	X_X
1._IMC_2___	TT	CC	CC	AG	CC	CT	TT	CT	TT	GG	X_X	X_X	X_X	X_X
2._IMC_2___	TT	CC	CC	AG	CC	CT	TT	CT	TT	GG	X_X	X_X	X_X	X_X
3._IMC_2___	TT	CC	CC	AG	CC	CT	TT	CT	TT	__	X_X	X_X	X_X	X_X
4._IMC_2___	TT	CC	__	AG	__	CT	TT	CT	__	__	X_X	X_X	X_X	X_X
5._IMC_2___	TT	CC	__	AG	__	CT	TT	CT	__	__	X_X	X_X	X_X	X_X
6._IMC_2___	TT	CC	__	AG	__	CT	TT	CT	__	__	X_X	X_X	X_X	X_X
7._IMC_2___	TT	CC	__	AG	__	CT	TT	CT	__	__	X_X	X_X	X_X	X_X
8._IMC_2___	TT	CC	__	AG	__	CT	TT	CT	__	__	X_X	X_X	X_X	X_X
9._IMC_2___	__	__	__	AG	CC	CT	TT	__	__	__	X_X	X_X	X_X	X_X
10._IMC_67___	TT	CC	CT	AA	CC	CT	GT	CT	__	__	X_X	X_X	X_X	X_X
11._IMC_67___	TT	CC	CT	AA	CC	CT	GT	CT	__	__	X_X	X_X	X_X	X_X
12._IMC_67___	TT	CC	CT	AA	CC	CT	GT	CT	__	__	X_X	X_X	X_X	X_X
13._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
14._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
15._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
16._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
17._IMC_67___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
18._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
19._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X
20._EET_233_[ECU]___	TT	CC	CT	AA	CC	CT	GT	CT	TT	GG	X_X	X_X	X_X	X_X

Input profile: IMC_2 GC-04-042-3-06

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._IMC_2 GC-04-042-3-06

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._IMC_2 GC-04-042-3-06

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

3._IMC_2 GC-04-042-3-06

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

4._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

5._IMC_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

6._IMC_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

7._IMC_2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

8._IMC_2 RUQ_828

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._IMC_2 RUQ_828

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._IMC_67 GC-05-82-2-33

90.4 %
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL1

Notes: PL1 FP1

11._IMC_67 GC-05-82-2-33

90.4 %
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL3

Notes: PL3 FP5

12._IMC_67 GC-05-82-2-33

90.4 %
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL4

Notes: PL4 FP3

13._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._IMC_67 GC-05-082-2-33

90.3 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

18._EET_233_[ECU] GC-05-076-2-27

90.2 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._EET_233_[ECU] GC-05-149-4-02

90.2 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

20._EET_233_[ECU] GC-05-149-4-02

90.1 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240