SNP Profiles matching IMC 2

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCACGGGGCCCCCCGGTTTTTTAA
1._IMC_2___
AACCCCACGGGGCCCCCCGGTTTTTTAA
2._IMC_2___
AACCCCACGGGGCCCCCCGGTTTTTTAA
3._IMC_2___
AACCCCACGGGGCCCCCCGGTTTTTTAA
4._IMC_2___
AACCCCAC________CCGG__TT____
5._IMC_2___
AACCCCAC________CCGG__TT____
6._IMC_2___
AACCCCAC________CCGG__TT____
7._IMC_2___
AACCCCAC________CCGG__TT____
8._IMC_2___
AACCCCAC________CCAG__CT____
9._IMC_2___
____CCAC____TT__CC__TTTT____
10._IMC_67___
AACCCCAC__GGCCCCCCGGTTCTTTAA
11._IMC_67___
AACCCCACGGGGCCCCCCGGTTCTTTAA
12._IMC_67___
AACCCCACGGGGCCCCCCGGTTCTTTAA
13._EET_233_[ECU]___
AACCCCACGGGGCCCCCCGGTTCTTTAA
14._EET_233_[ECU]___
AACCCCACGGGGCCCCCCGGTTCTTTAA
15._EET_233_[ECU]___
AACCCCACGGGGCCCCCCGGTTCTTTAA
16._EET_233_[ECU]___
AACCCCACGGGGCCCCCCGGTTCTTTAA
17._IMC_67___
AACCCCACGGGGCCCCCCGGTTCTTTAA
18._EET_233_[ECU]___
AACCCCACGGGGCCCCCCGGTTCTTTAA
19._EET_233_[ECU]___
AACCCCACGGGGCCCCCCGGTTCTTTAA
20._EET_233_[ECU]___
__CCCCACGGGGCCCCCCGGTTCTTTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCCAATTGGTTATCCCC
1._IMC_2___
AAAAGGCGCCGGCCAATTGGTTATCCCC
2._IMC_2___
AAAA__CGCCGGCCAATTGGTTATCCCC
3._IMC_2___
AAAAGGCGCCGGCCAATTGGTTATCCCC
4._IMC_2___
____GG____GG________TTAT__CC
5._IMC_2___
____GG____GG________TTAT__CC
6._IMC_2___
____GG____GG________TTAT__CC
7._IMC_2___
__________GG________TTAT__CC
8._IMC_2___
____GG____GG________TTAT__CC
9._IMC_2___
________CC________GG__ATCCCC
10._IMC_67___
AA__GGCGCCGGCTAATTGGTT__CCCC
11._IMC_67___
AA__GGCGCCGGCTAATTGGTT__CCCC
12._IMC_67___
AA__GGCGCCGGCTAATTGGTTAACCCC
13._EET_233_[ECU]___
AA__GGCGCCGGCTAATTGGTTAACCCC
14._EET_233_[ECU]___
AA__GGCGCCGGCTAATTGGTTAACCCC
15._EET_233_[ECU]___
AA__GGCGCCGGCTAATTGGTTAACCCC
16._EET_233_[ECU]___
AA__GGCGCCGGCTAATTGGTTAACCCC
17._IMC_67___
AA__GGCGCCGGCTAATTGGTTAACCCC
18._EET_233_[ECU]___
AA__GGCGCCGGCTAA__GGTTAACCCC
19._EET_233_[ECU]___
AA__GGCG__GGCTAATTGGTTAACCCC
20._EET_233_[ECU]___
AA__GGCGCCGGCTAATTGGTTAACCCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGGGGGGCCAATTGGTTAGCTGGCC
1._IMC_2___
ATTTGGGGGGCCAATTGGTTAGCTGGCC
2._IMC_2___
ATTTGGGGGGCCAATTGGTTAGCTGGCC
3._IMC_2___
ATTTGGGGGGCCAATTGGTTAGCTGGCC
4._IMC_2___
AT______GG__AATT____AG______
5._IMC_2___
AT______GG__AATT____AG______
6._IMC_2___
AT______GG__AATT____AG______
7._IMC_2___
AT______GG__AATT____AG______
8._IMC_2___
AT______GG__AATT____AG______
9._IMC_2___
______GGCGCCAATT____AGCT____
10._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
11._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
12._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
13._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
14._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
15._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
16._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
17._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
18._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
19._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
20._EET_233_[ECU]___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGAGGTTTCTCC
1._IMC_2___
GGTTTTAGAGAACCCCGGAGGTTTCTCC
2._IMC_2___
GGTTTTAGAGAACCCCGGAGGTTTCTCC
3._IMC_2___
GGTTTTAGAGAACCCCGGAGGTTTCTCC
4._IMC_2___
____TT__________________CTCC
5._IMC_2___
____TT__________________CTCC
6._IMC_2___
____TT__________________CTCC
7._IMC_2___
____TT__________________CTCC
8._IMC_2___
____TT__________________CTCC
9._IMC_2___
GGTT____AG____________CTCT__
10._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
11._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
12._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
13._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
14._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
15._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
16._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
17._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
18._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
19._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
20._EET_233_[ECU]___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTACCGGGCCAGGTGTGGTT
1._IMC_2___
TTGGCCCCTTACCGGGCCAGGTGTGGTT
2._IMC_2___
TTGGCCCCTTACCGGGCCAGGTGTGGTT
3._IMC_2___
TTGGCCCCTTACCGGGCCAGGTGTGGTT
4._IMC_2___
____CC__TTACCG__CCAGGTGT____
5._IMC_2___
____CC__TTACCG__CCAGGTGT____
6._IMC_2___
____CC__TTACCG__CCAGGTGT____
7._IMC_2___
____CC__TTACCG__CCAGGTGT____
8._IMC_2___
____CC__TTACCG__CCAGGTGT____
9._IMC_2___
TT__CCCCTTAC__GGCCAGGTGTGG__
10._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
11._IMC_67___
TT__CGCCTTACGGGGCCAGGTGGGGTT
12._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
13._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
14._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
15._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
16._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
17._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
18._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
19._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
20._EET_233_[ECU]___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACCACAGACACAAACGGCCATACCC
1._IMC_2___
CGAACCACAGACACAAACGGCCATACCC
2._IMC_2___
CGAACCACAGACACAAACGGCCATACCC
3._IMC_2___
CGAACCACAGACACAAACGGCCATACCC
4._IMC_2___
__AACC__________ACGG______CC
5._IMC_2___
__AACC__________ACGG______CC
6._IMC_2___
__AACC__________ACGG______CC
7._IMC_2___
__AACC__________ACGG______CC
8._IMC_2___
__AACC__________ACGG______CC
9._IMC_2___
________________ACGG____ACCC
10._IMC_67___
CGAACCAAAAACACAGACGGCCATCCCC
11._IMC_67___
CGAACCAAAAACACAGACGGCCATCCCC
12._IMC_67___
CG__CCAA__ACACAGACGGCCATCCCC
13._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCCATCCCC
14._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCCATCCCC
15._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCCATCCCC
16._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCCATCCCC
17._IMC_67___
CGAACCAAAAACACAGACGGCCATCCCC
18._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCCATCCCC
19._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCCATCCCC
20._EET_233_[ECU]___
CGAACCAAAAACACAGACGGCC__CCCC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCCCAGCCCTTTCTTTGGX_XX_XX_XX_X
1._IMC_2___
TTCCCCAGCCCTTTCTTTGGX_XX_XX_XX_X
2._IMC_2___
TTCCCCAGCCCTTTCTTTGGX_XX_XX_XX_X
3._IMC_2___
TTCCCCAGCCCTTTCTTT__X_XX_XX_XX_X
4._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
5._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
6._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
7._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
8._IMC_2___
TTCC__AG__CTTTCT____X_XX_XX_XX_X
9._IMC_2___
______AGCCCTTT______X_XX_XX_XX_X
10._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
11._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
12._IMC_67___
TTCCCTAACCCTGTCT____X_XX_XX_XX_X
13._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
14._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
15._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
16._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
17._IMC_67___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
18._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
19._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
20._EET_233_[ECU]___
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X

Input profile: IMC_2 GC-04-042-3-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

1._IMC_2 GC-04-042-3-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._IMC_2 GC-04-042-3-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_2 GC-04-042-3-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

5._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

6._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

7._IMC_2

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

8._IMC_2 RUQ_828

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._IMC_2 RUQ_828

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._IMC_67 GC-05-82-2-33

90.4 %
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

11._IMC_67 GC-05-82-2-33

90.4 %
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

12._IMC_67 GC-05-82-2-33

90.4 %
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

13._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._IMC_67 GC-05-082-2-33

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

18._EET_233_[ECU] GC-05-076-2-27

90.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._EET_233_[ECU] GC-05-149-4-02

90.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._EET_233_[ECU] GC-05-149-4-02

90.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240