SNP Profiles matching IMC 2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCACGGGGCCCCCCCCGGTTTTTT
1._IMC_2___
AACCCCACGGGGCCCCCCCCGGTTTTTT
2._IMC_2___
AACCCCACGGGGCCCCCC__GGTTTTTT
3._IMC_2___
AACCCCACGGGGCCCCCCCCGGTTTTTT
4._IMC_2___
AACCCCAC________CCCCGG__TT__
5._IMC_2___
AACCCCAC________CCCCGG__TT__
6._IMC_2___
AACCCCAC________CC__GG__TT__
7._IMC_2___
AACCCCAC________CCCCGG__TT__
8._IMC_2___
AACCCCAC________CCCCAG__CT__
9._IMC_2___
____CCAC____TT__CC____TTTT__
10._IMC_67___
AACCCCAC__GGCCCCCCCCGGTTCTTT
11._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
12._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
13._EET_233_[ECU]___
AACCCCACGGGGCCCCCCCCGGTTCTTT
14._EET_233_[ECU]___
AACCCCACGGGGCCCCCCCCGGTTCTTT
15._EET_233_[ECU]___
AACCCCACGGGGCCCCCCCCGGTTCTTT
16._EET_233_[ECU]___
AACCCCACGGGGCCCCCCCCGGTTCTTT
17._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
18._EET_233_[ECU]___
AACCCCACGGGGCCCCCCCCGGTTCTTT
19._EET_233_[ECU]___
AACCCCACGGGGCCCCCCCCGGTTCTTT
20._EET_233_[ECU]___
__CCCCACGGGGCCCCCCCCGGTTCTTT
21._IMC_67___
AACCCCACGGGGCC__CCCCGGTTCTTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAGGCGCCGGCCAATTGGTTATCC
1._IMC_2___
AAAAAA__CGCCGGCCAATTGGTTATCC
2._IMC_2___
AAAAAAGGCGCCGGCCAATTGGTTATCC
3._IMC_2___
AAAAAAGGCGCCGGCCAATTGGTTATCC
4._IMC_2___
______GG____GG________TTAT__
5._IMC_2___
______GG____GG________TTAT__
6._IMC_2___
______GG____GG________TTAT__
7._IMC_2___
____________GG________TTAT__
8._IMC_2___
______GG____GG________TTAT__
9._IMC_2___
__________CC________GG__ATCC
10._IMC_67___
AAAA__GGCGCCGGCTAATTGGTT__CC
11._IMC_67___
AAAA__GGCGCCGGCTAATTGGTT__CC
12._IMC_67___
AAAA__GGCGCCGGCTAATTGGTTAACC
13._EET_233_[ECU]___
AAAA__GGCGCCGGCTAATTGGTTAACC
14._EET_233_[ECU]___
AAAA__GGCGCCGGCTAATTGGTTAACC
15._EET_233_[ECU]___
AAAA__GGCGCCGGCTAATTGGTTAACC
16._EET_233_[ECU]___
AAAA__GGCGCCGGCTAATTGGTTAACC
17._IMC_67___
AAAA__GGCGCCGGCTAATTGGTTAACC
18._EET_233_[ECU]___
AAAA__GGCGCCGGCTAA__GGTTAACC
19._EET_233_[ECU]___
AAAA__GGCG__GGCTAATTGGTTAACC
20._EET_233_[ECU]___
AAAA__GGCGCCGGCTAATTGGTTAACC
21._IMC_67___
AAAA__GGCGCCGGCTAATTGGTTAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGGGGGGCCAATTGGTTAGCTGG
1._IMC_2___
CCATTTGGGGGGCCAATTGGTTAGCTGG
2._IMC_2___
CCATTTGGGGGGCCAATTGGTTAGCTGG
3._IMC_2___
CCATTTGGGGGGCCAATTGGTTAGCTGG
4._IMC_2___
CCAT______GG__AATT____AG____
5._IMC_2___
CCAT______GG__AATT____AG____
6._IMC_2___
CCAT______GG__AATT____AG____
7._IMC_2___
CCAT______GG__AATT____AG____
8._IMC_2___
CCAT______GG__AATT____AG____
9._IMC_2___
CC______GGCGCCAATT____AGCT__
10._IMC_67___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
11._IMC_67___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
12._IMC_67___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
13._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
14._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
15._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
16._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
17._IMC_67___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
18._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
19._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
20._EET_233_[ECU]___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
21._IMC_67___
CCAATTGGGGGGCCAAGTGGTTAGCCGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTAGAGAACCCCGGAGGTTTCT
1._IMC_2___
CCGGTTTTAGAGAACCCCGGAGGTTTCT
2._IMC_2___
CCGGTTTTAGAGAACCCCGGAGGTTTCT
3._IMC_2___
CCGGTTTTAGAGAACCCCGGAGGTTTCT
4._IMC_2___
______TT__________________CT
5._IMC_2___
______TT__________________CT
6._IMC_2___
______TT__________________CT
7._IMC_2___
______TT__________________CT
8._IMC_2___
______TT__________________CT
9._IMC_2___
__GGTT____AG____________CTCT
10._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
11._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
12._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
13._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
14._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
15._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
16._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
17._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
18._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
19._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
20._EET_233_[ECU]___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
21._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTGGCCCCTTACCGGGCCAGGTGTGG
1._IMC_2___
CCTTGGCCCCTTACCGGGCCAGGTGTGG
2._IMC_2___
CCTTGGCCCCTTACCGGGCCAGGTGTGG
3._IMC_2___
CCTTGGCCCCTTACCGGGCCAGGTGTGG
4._IMC_2___
CC____CC__TTACCG__CCAGGTGT__
5._IMC_2___
CC____CC__TTACCG__CCAGGTGT__
6._IMC_2___
CC____CC__TTACCG__CCAGGTGT__
7._IMC_2___
CC____CC__TTACCG__CCAGGTGT__
8._IMC_2___
CC____CC__TTACCG__CCAGGTGT__
9._IMC_2___
__TT__CCCCTTAC__GGCCAGGTGTGG
10._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
11._IMC_67___
CCTT__CGCCTTACGGGGCCAGGTGGGG
12._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
13._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
14._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
15._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
16._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
17._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
18._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
19._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
20._EET_233_[ECU]___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
21._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCGAACCACAGACACAAACGGCCATAC
1._IMC_2___
TTCGAACCACAGACACAAACGGCCATAC
2._IMC_2___
TTCGAACCACAGACACAAACGGCCATAC
3._IMC_2___
TTCGAACCACAGACACAAACGGCCATAC
4._IMC_2___
____AACC__________ACGG______
5._IMC_2___
____AACC__________ACGG______
6._IMC_2___
____AACC__________ACGG______
7._IMC_2___
____AACC__________ACGG______
8._IMC_2___
____AACC__________ACGG______
9._IMC_2___
__________________ACGG____AC
10._IMC_67___
TTCGAACCAAAAACACAGACGGCCATCC
11._IMC_67___
TTCGAACCAAAAACACAGACGGCCATCC
12._IMC_67___
TTCG__CCAA__ACACAGACGGCCATCC
13._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCCATCC
14._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCCATCC
15._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCCATCC
16._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCCATCC
17._IMC_67___
TTCGAACCAAAAACACAGACGGCCATCC
18._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCCATCC
19._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCCATCC
20._EET_233_[ECU]___
TTCGAACCAAAAACACAGACGGCC__CC
21._IMC_67___
TT__AACCAAAAACACAGACGGCCATCC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CCTTCCCCAGCCCTTTCTTTGGX_XX_XX_X
1._IMC_2___
CCTTCCCCAGCCCTTTCTTTGGX_XX_XX_X
2._IMC_2___
CCTTCCCCAGCCCTTTCTTTGGX_XX_XX_X
3._IMC_2___
CCTTCCCCAGCCCTTTCTTT__X_XX_XX_X
4._IMC_2___
CCTTCC__AG__CTTTCT____X_XX_XX_X
5._IMC_2___
CCTTCC__AG__CTTTCT____X_XX_XX_X
6._IMC_2___
CCTTCC__AG__CTTTCT____X_XX_XX_X
7._IMC_2___
CCTTCC__AG__CTTTCT____X_XX_XX_X
8._IMC_2___
CCTTCC__AG__CTTTCT____X_XX_XX_X
9._IMC_2___
CC______AGCCCTTT______X_XX_XX_X
10._IMC_67___
CCTTCCCTAACCCTGTCT____X_XX_XX_X
11._IMC_67___
CCTTCCCTAACCCTGTCT____X_XX_XX_X
12._IMC_67___
CCTTCCCTAACCCTGTCT____X_XX_XX_X
13._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
14._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
15._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
16._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
17._IMC_67___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
18._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
19._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
20._EET_233_[ECU]___
CCTTCCCTAACCCTGTCTTTGGX_XX_XX_X
21._IMC_67___
CCTTCCCTAACCCTGTCT____X_XX_XX_X

Input profile: IMC_2 GC-04-042-3-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._IMC_2 GC-04-042-3-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._IMC_2 GC-04-042-3-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._IMC_2 GC-04-042-3-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._IMC_2

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

5._IMC_2

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

6._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

7._IMC_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

8._IMC_2 RUQ_828

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._IMC_2 RUQ_828

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._IMC_67 GC-05-82-2-33

90.6 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

11._IMC_67 GC-05-82-2-33

90.6 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

12._IMC_67 GC-05-82-2-33

90.6 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

13._EET_233_[ECU] GC-05-076-2-27

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EET_233_[ECU] GC-05-076-2-27

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._EET_233_[ECU] GC-05-076-2-27

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._EET_233_[ECU] GC-05-076-2-27

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._IMC_67 GC-05-082-2-33

90.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

18._EET_233_[ECU] GC-05-076-2-27

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._EET_233_[ECU] GC-05-149-4-02

90.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._EET_233_[ECU] GC-05-149-4-02

90.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._IMC_67 GC-05-82-2-33

90 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240