SNP Profiles matching PA 121 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
1._PA_121_[PER]___	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
2._PA_121_[PER]___	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
3._PA_121_[PER]___	__	__	CT	CC	__	__	CC	__	CC	__	__	TT	CC	__
4._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
5._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
6._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
7._ICS_1___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
8._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
9._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
10._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
11._PA_121_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
12._PA_289_[PER]___	__	__	CT	CC	__	__	CC	__	CC	__	__	TT	CC	__
13._PA_299_[PER]___	__	__	CT	CC	__	__	CT	__	CC	__	__	TT	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
1._PA_121_[PER]___	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
2._PA_121_[PER]___	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
3._PA_121_[PER]___	__	__	__	__	CC	__	__	__	__	GG	__	AA	CC	GG
4._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
5._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
6._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
7._ICS_1___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
8._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
9._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
10._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
11._PA_121_[PER]___	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
12._PA_289_[PER]___	__	__	__	__	CC	__	__	__	__	GG	__	AA	CC	GG
13._PA_299_[PER]___	__	__	__	__	CC	__	__	__	__	GG	__	AA	CC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
1._PA_121_[PER]___	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
2._PA_121_[PER]___	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
3._PA_121_[PER]___	__	__	__	GG	CG	CC	AG	GT	__	__	GG	TT	__	__
4._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
5._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
6._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
7._ICS_1___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
8._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
9._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
10._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
11._PA_121_[PER]___	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
12._PA_289_[PER]___	__	__	__	GG	CG	CC	AG	GT	__	__	GG	TT	__	__
13._PA_299_[PER]___	__	__	__	GG	CG	CC	AG	GG	__	__	GG	TT	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CT	TT	GG
1._PA_121_[PER]___	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CT	TT	GG
2._PA_121_[PER]___	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CT	TT	GG
3._PA_121_[PER]___	GG	TT	__	__	GG	__	__	__	__	__	__	__	TT	__
4._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
5._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
6._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
7._ICS_1___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
8._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
9._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
10._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
11._PA_121_[PER]___	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
12._PA_289_[PER]___	GG	TT	__	__	GG	__	__	__	__	__	__	__	TT	__
13._PA_299_[PER]___	GG	TT	__	__	GG	__	__	__	__	__	__	__	TT	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC	AA
1._PA_121_[PER]___	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC	AA
2._PA_121_[PER]___	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC	AA
3._PA_121_[PER]___	CC	CT	CT	AA	__	GG	AC	AA	GG	GG	AG	__	__	__
4._PA_121_[PER]___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
5._PA_121_[PER]___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
6._PA_121_[PER]___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
7._ICS_1___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
8._PA_121_[PER]___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
9._PA_121_[PER]___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
10._PA_121_[PER]___	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
11._PA_121_[PER]___	__	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
12._PA_289_[PER]___	CC	CT	CT	AA	__	GG	AC	GG	GG	GG	AG	__	__	__
13._PA_299_[PER]___	CC	CT	CT	AA	__	GG	AC	GG	GG	GG	AG	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT	CC
1._PA_121_[PER]___	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT	CC
2._PA_121_[PER]___	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT	CC
3._PA_121_[PER]___	__	__	__	__	__	__	AA	GG	__	__	AA	TT	__	__
4._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
5._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
6._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
7._ICS_1___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
8._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
9._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
10._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
11._PA_121_[PER]___	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	__
12._PA_289_[PER]___	__	__	__	__	__	__	AA	GG	__	__	AA	TT	__	__
13._PA_299_[PER]___	__	__	__	__	__	__	AC	CC	__	__	AA	TT	__	__

	85	86	87	88	89	90	91	92
_Input profile	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._PA_121_[PER]___	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_121_[PER]___	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_121_[PER]___	__	AG	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_1___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
9._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
10._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
11._PA_121_[PER]___	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
12._PA_289_[PER]___	__	AA	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
13._PA_299_[PER]___	__	AA	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER] GC-05-011-1-11

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

Mars, 2018

1._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

3._PA_121_[PER] RUQ_1059

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

5._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

6._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

7._ICS_1

identical
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

8._PA_121_[PER] RUQ_1059

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._PA_121_[PER]

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

10._PA_121_[PER]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

11._PA_121_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

12._PA_289_[PER] RUQ_952

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._PA_299_[PER] RUQ_1621

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240

SNP Profiles matching PA 121 [PER]

Show/Hide Profiles

Input profile: PA_121_[PER] GC-05-011-1-11

1._PA_121_[PER] GC-05-011-1-11

identical 92 shared markers

2._PA_121_[PER] GC-05-011-1-11

identical 92 shared markers

3._PA_121_[PER] RUQ_1059

identical 40 shared markers

4._PA_121_[PER]

identical 39 shared markers

5._PA_121_[PER]

identical 39 shared markers

6._PA_121_[PER]

identical 39 shared markers

7._ICS_1

identical 39 shared markers

8._PA_121_[PER] RUQ_1059

identical 39 shared markers

9._PA_121_[PER]

identical 39 shared markers

10._PA_121_[PER]

identical 39 shared markers

11._PA_121_[PER]

identical 37 shared markers

12._PA_289_[PER] RUQ_952

96.3 % 40 shared markers

13._PA_299_[PER] RUQ_1621

90 % 40 shared markers

identical
92 shared markers

identical
92 shared markers

identical
40 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
37 shared markers

96.3 %
40 shared markers

90 %
40 shared markers