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SCA 5 Group Name Theobroma cacao

Pound, F.J. (1938)
Cacao and Witchbroom Disease of South America with notes on other species of Theobroma. Archives of Cocoa Research 1: pp. 26-71.

Collected by Pound.
Location: Rio Ucayali, Peru.

Notes: Pound, 1943b [POU43B]. 22 plants were planted at Marper farm.

Bartley, 1993a [BAR93A]. Fausto Coral said that SCA stands for Sabino Contamana. Bartley considers that it is likely that the material comes from the town known to Pound as Contamana (on the R. Ucayali) since these progenies are very similar to P 31 [POU] from this area. Miguel Aspiazu (who accompanied Pound in Ecuador) said SCA came from Sabino and this may have been misinterpreted as SCAVINA.

UK - CABI Bioscience, 1998 [CAB98A] During surveys of Theobroma and Herrania spp. along the Amazon and Ucayali rivers (Pucallpa-Iquitos) in Octobet 1998, the local guide provided some detailed information on the history of the region. It seems the origin of the Scavinas is near to Iquitos around the Nanay river, from a Hacienda owned by the ESCAVINO family. The farm goes back to the pre-1930's but most of it has now been destroyed as the river Nanay has changed its course. This story, and the corruption of the name, was confirmed by a respected Peruvian agronomist, Reynaldo Crespo, who worked in the region 40 years ago.

SNP/SSR Populations Images

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Synonyms: SCAVINA 5

POPULATION

Motamayor, J.C. et al., 2008: 'Contamana' Population; Subgroup: 'Scavina' Reference

Reference

Motamayor, J.C., Lachenaud, P., da Silva e Mota, J.W., Loor, R., Kuhn, D.N., Brown, J.S. & Schnell, R.J. 2008
Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L). PLoS ONE 3(10): e3311. doi:10.1371/journal.pone.0003311
Population SSR

GENOME/TRANSCRIPTOME DATA LINKS

Xavier Argout et al., 2023

Reference

BioProject: PRJNA880462 NCBI ENA FASTQ

Library Source: Genomic

Run: SRR21562147 NCBI ENA FASTQ

Experiment: SRX17564432

BioSample: SAMN30841517

SampleName: SCA_5

Cornejo, O.E. et al., 2018

Reference

BioProject: PRJNA486011 NCBI ENA FASTQ

Project: PRJEB28591 EVA (project) EVA (analysis)

Library Source: Genomic

Run: SRR7774199 NCBI ENA FASTQ

Experiment: SRX4629625

BioSample: SAMN09934543

SampleName: SCA_5

SampleSource: gDNA Miami, Tree_ID: Tc00884

HELD IN

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Brazil, Comissão Executiva do Plano da Lavoura Cacaueira/Centro de Pesquisas do Cacau (CEPLAC/CEPEC): List received in 2012 Reference

Reference

CEPEC 2012
Accession list for the CEPEC (Bahia, Brazil) collection. Dr. José Luis Pires, personal communication, February 2012.; • Accession: 998; - Local Name: SCA 5; • Accession: 998; - Local Name: SCA 5; • Accession: 998; - Local Name: SCA 5
Brazil, Comissao Executiva do Plano da Lavoura Cacaueira (CEPLAC): List received in 1997 Reference

Reference

Brazil - Almirante Cacao 1997
Cocoa Germplasm Importation Lists 1994 - 1997. Unpublished list supplied by Martin Aitken.; • Local Name: SCA 5; - Year of Accession: 1997
Brazil, Mars Center for Cocoa Science: List received in 2012 Reference

Reference

Mars Center for Cocoa Science 2012
Accession list for the Mars Center for Cocoa Science. Jean-Philippe Marelli, personal communication, February 2012.; • Local Name: SCA-5; - Year of Accession: 1996
Malaysia, Agricultural Research Centre (ARC): List received in 1990 Reference

Reference

Malaysia - ARC Tuaran 1990
List of clones held in the Dept. of Agriculture's collection, at Sabah, Tuaran, Malaysia. E.B. Tay, Malaysian Cocoa Board, Malaysia. Personal Communication.; • Local Name: SCA 5
Trinidad and Tobago, International Cocoa Genebank, Trinidad (ICG,T): List received in 2011 Reference

Reference

CRU 2011
ICG,T accessions. CRU website.
Notes

Website visited 12th April 2011

Link Unavailable [http://sta.uwi.edu/cru/icgt-accessions.asp]; • Local Name: SCA 5

DISEASE

Witches Broom: Resistant (Field Reaction).; Butler, D.R. et al., 1998

Reference

Butler, D.R., Iwaro, A.D., Thevenin, J.-M., Bekele, F., Sounigo, O., Christopher, Y. & Mooledhar, V. 1998
Individual Institute Reports - Trinidad & Tobago, CRU. Report on the IPGRI project: Cocoa Germplasm Utilisation and Conservation, A Global Approach. Appendix to General Progress Report of Year 1.
Notes

Trinidad - ICG,T, University of the West Indies Datafile: DIS_PHDS - Disease reaction to Phytophthora DIS_WBDS - Disease reaction to Witches' Broom DIS_VSDS - Disease reaction to VSD DIS_CEDS - Disease reaction to Ceratocystis Descriptors: General observations and main traits of genotypes Environment: No details Germplasm: Clones included in the CFC/ICCO/IPGRI Cocoa Germplasm Utilisation and Conservation project.

Disease; Tolerant; Enriquez, G. & Soria, V.J., 1977

Reference

Enriquez, G. & Soria, V.J. 1977
Mejoramiento genético para resistencia a cinco enfermedades del cacao. In: Proceedings of the 6th International Cocoa Research Conference, Caracas, Venezuela, 1977. Cocoa Producers' Alliance, Lagos, Nigeria. pp. 45-56.
Notes

Various data sources Review of disease data complied at Costa Rica - CATIE from sources including: Costa Rica - CATIE, Trinidad - CRU, University of the West Indies, Ghana - WACRI, Ecuador - Pichilingue. Datafile: DIS_MODS - Disease reaction to Monilia Pod Rot DIS___DS - Disease reaction to stress and disease DIS_PHDS - Disease reaction to Phytophthora DIS_SSDS - Disease reaction to CSSV DIS_WBDS - Disease reaction to Witches' Broom DIS_CEDS - Disease reaction to Ceratocystis Descriptors: Information on the type of disease/stress and the reaction of the clone.

Disease

YIELD

Frances Bekele & Gillian Bidaisee, 2022: Pod Index: 40.3 (pods per kg dried beans); Reference

Reference

Frances Bekele & Gillian Bidaisee 2022
Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.
Notes

This single reference supercedes data entered previously and will be kept up-to-date to allow this information to be grouped together.

Yield Bean Butterfat Fruit Flush Flower

BEAN

Bartley, B.G.D., 1970: Size: small; Reference

Reference

Bartley, B.G.D. 1970
A preliminary catalogue of the cacao germplasm held at the University of the West Indies, Trinidad. University of the West Indies, St. Augustine, Trinidad.
Notes

Trinidad - University of the West Indies Datafile: ICGT2_DS TTO - UWI Cacao Collection Germplasm: Passport descriptors for approximately 1000 accessions of mainly South American and Trinidadian origin. Environment: No details. Descriptors: Six descriptors for fruit, seed and compatability characteristics. Character Data: Combinations used FXC = forastero x criollo, TX = trinitario cross

Bean Fruit Flower
Frances Bekele & Gillian Bidaisee, 2022: Colour: purple; Shape: elliptical; Number: 36.0; Total Wet Weight: 32.3 g; Cotyledon Dry Weight: 0.69 g; Cotyledon Length: 17.7 mm; Cotyledon Width: 9.3 mm; Reference

Reference

Frances Bekele & Gillian Bidaisee 2022
Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.
Notes

This single reference supercedes data entered previously and will be kept up-to-date to allow this information to be grouped together.

Yield Bean Butterfat Fruit Flush Flower

BUTTERFAT

Frances Bekele & Gillian Bidaisee, 2022: Testa: 6.20 %; Reference

Reference

Frances Bekele & Gillian Bidaisee 2022
Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.
Notes

This single reference supercedes data entered previously and will be kept up-to-date to allow this information to be grouped together.

Yield Bean Butterfat Fruit Flush Flower
Trinidad - CRU, 1998: Butterfat Content: 52.40 %; Testa: 7.00 %; Reference

Reference

Trinidad - CRU 1998
Fat Analysis Data. Data supplied on computer diskette by F. Bekele, CRU, Trinidad.
Notes

Trinidad - CRU, University of the West Indies Datafile: TTOFATDS TTO - Fat Analysis Germplasm: Data is provided on 410 accessions. Environment: No details given. Descriptors: Data for the fat content of the shell, including standard error and the butterfat content is presented. Methods: Ripe, open pollinated pods were harvested, 2 pods from each of 5 trees (10 pods per accession) were selected. The beans were then mixed thoroughly and a sub-sample taken. The sub-sample was then cleaned to remove the mucliage, oven dried and stored at room temperature until analysis. For each accession 2 bean samples (each consisting of 20 beans) were taken from the bulked sample. The beans were shelled and eaach sample was groung using a coffee grinder (2x30 seconds). The ground samples were then dried for 16 hours at 110 degrees C, cooled and stored in a dessicator at 25 degrees C until analysis. From the cried ground samples, a 2 gram sub-sample was weighed into a beaker, 100 ml of 4.0M HCl was added and the sample boiled for 30 minutes. The boiled sample was filtered and the residue washed with distilled water until clear of pigment. After washing, the filtered sample was placed in an extraction thimble and dried for 16 hours at 60 degrees C. The butterfat from the bean samples was extracted using the Soxtec System (Tecetor). Each dried sample was extracted for one hour using petroleum ether (40-60) as the solvent. The butterfat extracted from the sample was then dried in an oven for 30 minutes at 100 degrees C, cooled in a dessicator and the percentage butterfat determined on a dry matter basis.

Butterfat

FRUIT

Bartley, B.G.D., 1970: Size: medium; Reference

Reference

Bartley, B.G.D. 1970
A preliminary catalogue of the cacao germplasm held at the University of the West Indies, Trinidad. University of the West Indies, St. Augustine, Trinidad.
Notes

Trinidad - University of the West Indies Datafile: ICGT2_DS TTO - UWI Cacao Collection Germplasm: Passport descriptors for approximately 1000 accessions of mainly South American and Trinidadian origin. Environment: No details. Descriptors: Six descriptors for fruit, seed and compatability characteristics. Character Data: Combinations used FXC = forastero x criollo, TX = trinitario cross

Bean Fruit Flower
Frances Bekele & Gillian Bidaisee, 2022: Shape: elliptical; Basal Constriction: moderate; Apex Form: acute; Rugosity: moderate; Length: 163.0 mm; Breadth: 60.0 mm; Colour: anthocyanin absent; Hardness: hard; Note: Hardness > 2.0 Mpa; Reference

Reference

Frances Bekele & Gillian Bidaisee 2022
Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.
Notes

This single reference supercedes data entered previously and will be kept up-to-date to allow this information to be grouped together.

Yield Bean Butterfat Fruit Flush Flower

CADMIUM

Lewis, Caleb et al., 2018: Tissue: bean; Mean Cadmium Content: 2.08 %; Accumulation: high; Reference

Reference

Lewis, Caleb, Adrian M. Lennon, Gaius Eudoxie & Pathmanathan Umaharan 2018
Genetic variation in bioaccumulation and partitioning of cadmium in Theobroma cacao L. Science of the Total Environment 640–641, 696–703
DOI: 10.1016/j.scitotenv.2018.05.365

Cadmium

FLUSH

Frances Bekele & Gillian Bidaisee, 2022: Colour: slight anthocyanin; Reference

Reference

Frances Bekele & Gillian Bidaisee 2022
Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.
Notes

This single reference supercedes data entered previously and will be kept up-to-date to allow this information to be grouped together.

Yield Bean Butterfat Fruit Flush Flower

LEAF

Trinidad - ICGT, 1992: Distance from Base to Widest Part: 138 mm; Length: 259.0 mm; Width: 101.0 mm; Length to Width Ratio: 2.60; Basal Angle: 118.9 °; Apical Angle: 77.5 °; Petiole Length: 18 mm; Pulvinus Length: 12 mm; Reference

Reference

Trinidad - ICGT 1992
Leaf descriptors. Unpublished data supplied on computer diskette by International Cocoa Genebank, Trinidad, University of the West Indies, Trinidad.
Notes

Trinidad - International Cocoa Genebank, CRU, University of the West Indies.
Flower descriptor data is presented for 620 clones, fruit descriptor data of 333 and seed characters of 118 clones are partly described. Leaf descriptor data is presented for 229 clones. The germplasm is mainly of Peruvian, Ecuadorian and Colombian origin. Environment: Each clone is represented in the collection by up to 16 trees planted 1.8 m apart in a block design. Shading is provided by Erythrina sp. (spaced 60m apart) and bananas (spaced 4m apart). Fertilizer, N-P-K (15:10:5), is provided twice a year at 250g per tree. Cyclic irrigation is performed from February to May (10 l of water per plant/week). Soil type group -33 A 1 Soil Series - Cunupia fine sandy clay with restricted internal drainage Lithology - silty clay alluvium Drainage - imperfect Slope category - 0°-2° Meterological data are given in this table as mean maximum, mean minimum and overall mean temperature and mean total rainfall per month over the period 1961-1990. Month Temp. (°C) Rainfall Max Min Mean (mm) January 30.1 20.8 24.6 71.2 February 30.2 20.8 25.0 43.3 March 31.2 21.4 25.7 36.6 April 31.8 22.3 26.5 51.1 May 31.6 23.3 26.9 116.5 June 30.6 23.3 26.4 252.1 July 30.8 23.0 26.2 266.3 August 31.2 22.9 26.4 250.1 September 31.5 22.8 26.5 202.5 October 31.4 22.82 6.41 99.3 November 30.8 22.4 25.9 227.8 December 30.2 21.5 25.2 155.6 Descriptors: The character selection is based on the IBPGR list (IBPGR, 1981 [IBP81A]). Where descriptor states present real measurements, e.g. pod length in cm, the data are given as the mean of all the measurements ± the standard deviation. For some descriptors, such as Leaf, flush colour, the phenotypic expression of the character is coded on a scale from 0 to 9. On this scale '0' represents the lowest or weakest expression of a characteristic and '9' represents the highest or strongest. Leaf and Flower Characteristics p.300-307

Leaf

FLOWER

Bartley, B.G.D., 1970: Self Compatibility: self incompatible; Reference

Reference

Bartley, B.G.D. 1970
A preliminary catalogue of the cacao germplasm held at the University of the West Indies, Trinidad. University of the West Indies, St. Augustine, Trinidad.
Notes

Trinidad - University of the West Indies Datafile: ICGT2_DS TTO - UWI Cacao Collection Germplasm: Passport descriptors for approximately 1000 accessions of mainly South American and Trinidadian origin. Environment: No details. Descriptors: Six descriptors for fruit, seed and compatability characteristics. Character Data: Combinations used FXC = forastero x criollo, TX = trinitario cross

Bean Fruit Flower
Frances Bekele & Gillian Bidaisee, 2022: Ligule Colour: anthocyanin absent; Stamen Colour: slight anthocyanin; Sepal Length: 7.31 mm; Ligule Width: 2.68 mm; Ovule Number: 43; Style Length: 2.41 mm; Pedicel Colour: reddish; Reference

Reference

Frances Bekele & Gillian Bidaisee 2022
Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.
Notes

This single reference supercedes data entered previously and will be kept up-to-date to allow this information to be grouped together.

Yield Bean Butterfat Fruit Flush Flower

REFERENCES

Pound, F.J. (1938) Cacao and Witchbroom Disease of South America with notes on other species of Theobroma. Archives of Cocoa Research 1: pp. 26-71.

Motamayor, J.C., Lachenaud, P., da Silva e Mota, J.W., Loor, R., Kuhn, D.N., Brown, J.S. & Schnell, R.J. (2008) Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L). PLoS ONE 3(10): e3311. doi:10.1371/journal.pone.0003311

Xavier Argout, Gaetan Droc, Olivier Fouet, Mathieu Rouard, Karine Labadie, Bénédicte Rhoné, Gaston Rey Loor & Claire Lanaud (2023) Pangenomic exploration of Theobroma cacao: New Insights into Gene Content Diversity and Selection During Domestication. bioRxiv preprint

Cornejo, O.E., Muh-Ching Yee, Victor Dominguez, Mary Andrews, Alexandra Sockell, Erika Strandberg, Donald Livingstone III, Conrad Stack, Alberto Romero, Pathmanathan Umaharan, Stefan Royaert, Nilesh R. Tawari, Pauline Ng, Osman Gutierrez, Wilbert Phillips, Keithanne Mockaitis, Carlos D. Bustamante & Juan C. Motamayor (2018) Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process. Commun Biol 1, 167

CEPEC (2012) Accession list for the CEPEC (Bahia, Brazil) collection. Dr. José Luis Pires, personal communication, February 2012.

Brazil - Almirante Cacao (1997) Cocoa Germplasm Importation Lists 1994 - 1997. Unpublished list supplied by Martin Aitken.

Mars Center for Cocoa Science (2012) Accession list for the Mars Center for Cocoa Science. Jean-Philippe Marelli, personal communication, February 2012.

Malaysia - ARC Tuaran (1990) List of clones held in the Dept. of Agriculture's collection, at Sabah, Tuaran, Malaysia. E.B. Tay, Malaysian Cocoa Board, Malaysia. Personal Communication.

CRU (2011) ICG,T accessions. CRU website.

Butler, D.R., Iwaro, A.D., Thevenin, J.-M., Bekele, F., Sounigo, O., Christopher, Y. & Mooledhar, V. (1998) Individual Institute Reports - Trinidad & Tobago, CRU. Report on the IPGRI project: Cocoa Germplasm Utilisation and Conservation, A Global Approach. Appendix to General Progress Report of Year 1.

Enriquez, G. & Soria, V.J. (1977) Mejoramiento genético para resistencia a cinco enfermedades del cacao. In: Proceedings of the 6th International Cocoa Research Conference, Caracas, Venezuela, 1977. Cocoa Producers' Alliance, Lagos, Nigeria. pp. 45-56.

Frances Bekele & Gillian Bidaisee (2022) Morphological data from the International Cocoa Collection (ICG,T) maintained by the Cocoa Research Centre (CRC), Trinidad & Tobago. Unpublished data on fruit, bean, flower and flush morphology supplied as an Excel spreadsheet by Frances Bekele. Last update March 2022.

Bartley, B.G.D. (1970) A preliminary catalogue of the cacao germplasm held at the University of the West Indies, Trinidad. University of the West Indies, St. Augustine, Trinidad.

Trinidad - CRU (1998) Fat Analysis Data. Data supplied on computer diskette by F. Bekele, CRU, Trinidad.

Lewis, Caleb, Adrian M. Lennon, Gaius Eudoxie & Pathmanathan Umaharan (2018) Genetic variation in bioaccumulation and partitioning of cadmium in Theobroma cacao L. Science of the Total Environment 640–641, 696–703

Trinidad - ICGT (1992) Leaf descriptors. Unpublished data supplied on computer diskette by International Cocoa Genebank, Trinidad, University of the West Indies, Trinidad.