SNP Profiles of "SCA 5"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
2. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
3. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
4. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
5. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
6. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
7. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
8. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
9. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
10. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
11. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
12. _GC-01-092-5-09
CGTTAAAGCCTTCCTTACGGTTTTGGCC
13. _1509_1
CG___AA_______________ACGGTT______CC
14. _1509_6
CG___AA_______________ACGGTT______CC
15. _1509_8
CG___AA_______________ACGGTT______CC
16. _1509_10
CG___AA_______________ACGGTT______CC
17. _1509_11
CG___AA_______________ACGGTT______CC
18. _1509_12
CG___AA_______________ACGGTT______CC
19. _1509_14
CG___AA_______________ACGGTT______CC
20. _1509_15
CG___AA_______________ACGGTT______CC
21. _1509_13_>_F
CG___AA_______________ACGGTT______CC
22. _1509_4_>_FP
CG___AA_______________ACGGTT______CC
23. _1509_5_>_FP
CG___AA_______________ACGGTT______CC
24. _1509_9_>_FP
CG___AA_______________ACGGTT______CC
25. _6B_A25_T2
CG___AA_______________ACGGTT______CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
2. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
3. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
4. _GC-01-092-5-09
CCGGGGCTTT___GGAACCAAAAAAGGGG
5. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
6. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
7. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
8. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
9. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
10. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
11. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
12. _GC-01-092-5-09
CCGGGGCTTTAAGGAACCAAAAAAGGGG
13. _1509_1
CCGG___CT_________AA______AA______GG
14. _1509_6
CCGG___CT_________AA______AA______GG
15. _1509_8
CCGG___CT_________AA______AA______GG
16. _1509_10
CCGG___CT_________AA______AA______GG
17. _1509_11
CCGG___CT_________AA______AA______GG
18. _1509_12
CCGG___CT_________AA______AA______GG
19. _1509_14
CCGG___CT_________AA______AA______GG
20. _1509_15
CCGG___CT_________AA______AA______GG
21. _1509_13_>_F
CCGG___CT_________AA______AA______GG
22. _1509_4_>_FP
CCGG___CT_________AA______AA______GG
23. _1509_5_>_FP
CCGG___CT_________AA______AA______GG
24. _1509_9_>_FP
CCGG___CT_________AA______AA______GG
25. _6B_A25_T2
CCGG___CT_________AA______AA______GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
2. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
3. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
4. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
5. _GC-01-092-5-09
AC___CCAAGGGGCCCCCCGGTTAGAAAG
6. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
7. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
8. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
9. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
10. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
11. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
12. _GC-01-092-5-09
ACAACCAAGGGGCCCCCCGGTTAGAAAG
13. _1509_1
___AACC___GG___CCCC______TTAG______
14. _1509_6
___AACC___GG___CCCC______TTAG______
15. _1509_8
______CC___GG___CCCC______TTAG______
16. _1509_10
___AACC___GG___CCCC______TTAG______
17. _1509_11
___AACC___GG___CCCC______TTAG______
18. _1509_12
___AACC___GG___CCCC______TTAG______
19. _1509_14
___AACC___GG___CCCC______TTAG______
20. _1509_15
___AACC___GG___CCCC______TTAG______
21. _1509_13_>_F
___AACC___GG___CCCC______TTAG______
22. _1509_4_>_FP
___AACC___GG___CCCC______TTAG______
23. _1509_5_>_FP
___AACC___GG___CCCC______TTAG______
24. _1509_9_>_FP
___AACC___GG___CCCC______TTAG______
25. _6B_A25_T2
___AACC___GG___CCCC______TTGG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
2. _GC-01-092-5-09
CTTTGGAATTGG___CCCCAACCGGTTCC
3. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
4. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
5. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
6. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
7. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
8. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
9. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
10. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
11. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
12. _GC-01-092-5-09
CTTTGGAATTGGTTCCCCAACCGGTTCC
13. _1509_1
______GG_____________________CC___TT___
14. _1509_6
______GG_____________________CC___TT___
15. _1509_8
______GG_____________________CC___TT___
16. _1509_10
______GG_____________________CC___TT___
17. _1509_11
______GG_____________________CC___TT___
18. _1509_12
______GG_____________________CC___TT___
19. _1509_14
______GG_____________________CC___TT___
20. _1509_15
______GG_____________________CC___TT___
21. _1509_13_>_F
______GG_____________________CC___TT___
22. _1509_4_>_FP
______GG_____________________CC___TT___
23. _1509_5_>_FP
______GG_____________________CC___TT___
24. _1509_9_>_FP
______GG_____________________CC___TT___
25. _6B_A25_T2
______GG_____________________CC___TT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
2. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
3. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
4. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
5. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
6. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
7. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
8. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
9. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
10. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
11. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
12. _GC-01-092-5-09
GGCTCGCCTTCCAACCTTCCCCGGGGAT
13. _1509_1
___CTCG___TTCCAA_________CCGG___AT
14. _1509_6
___CTCG___TTCCAA_________CCGG___AT
15. _1509_8
___CTCG___TTCCAA_________CCGG___AT
16. _1509_10
___CTCG___TTCCAA_________CCGG___AT
17. _1509_11
___CTCG___TTCCAA_________CCGG___AT
18. _1509_12
___CTCG___TTCCAA_________CCGG___AT
19. _1509_14
___CTCG___TTCCAA_________CCGG___AT
20. _1509_15
___CTCG___TTCCAA_________CCGG___AT
21. _1509_13_>_F
___CTCG___TTCCAA_________CCGG___AT
22. _1509_4_>_FP
___CTCG___TTCCAA_________CCGG___AT
23. _1509_5_>_FP
___CTCG___TTCCAA_________CCGG___AT
24. _1509_9_>_FP
___CTCG___TTCCAA_________CCGG___AT
25. _6B_A25_T2
___CTCG___TTCCAA_________CCGG___AT
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
2. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
3. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
4. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
5. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
6. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
7. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
8. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
9. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
10. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
11. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
12. _GC-01-092-5-09
TTAGTTCCCCCCTTTTCCGTTTTTCCAA
13. _1509_1
_________CC______TT______GTTT___CC___
14. _1509_6
_________CC______TT______GTTT___CC___
15. _1509_8
_________CC______TT______GTTT___CC___
16. _1509_10
_________CC______TT______GTTT___CC___
17. _1509_11
_________CC______TT______GTTT___CC___
18. _1509_12
_________CC______TT______GTTT___CC___
19. _1509_14
_________CC______TT______GTTT___CC___
20. _1509_15
_________CC______TT______GTTT___CC___
21. _1509_13_>_F
_________CC______TT______GTTT___CC___
22. _1509_4_>_FP
_________CC______TT______GTTT___CC___
23. _1509_5_>_FP
_________CC______TT______GTTT___CC___
24. _1509_9_>_FP
_________CC______TT______GTTT___CC___
25. _6B_A25_T2
_________CC______TT______GTTT___CC___
 85 86 87 88 89 90 91 92 93 94 95    
1. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
2. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
3. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
4. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
5. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
6. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
7. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
8. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
9. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
10. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
11. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
12. _GC-01-092-5-09
CTCCTTCCAACCCCAACCGGCCX_XX_XX_X
13. _1509_1
CT___TTCCAACC_______________X_XX_XX_X
14. _1509_6
CT___TTCCAACC_______________X_XX_XX_X
15. _1509_8
CT___TTCCAACC_______________X_XX_XX_X
16. _1509_10
CT___TTCCAACC_______________X_XX_XX_X
17. _1509_11
CT___TTCCAACC_______________X_XX_XX_X
18. _1509_12
CT___TTCCAACC_______________X_XX_XX_X
19. _1509_14
CT___TTCCAACC_______________X_XX_XX_X
20. _1509_15
CT___TTCCAACC_______________X_XX_XX_X
21. _1509_13_>_F
CT___TTCCAACC_______________X_XX_XX_X
22. _1509_4_>_FP
CT___TTCCAACC_______________X_XX_XX_X
23. _1509_5_>_FP
CT___TTCCAACC_______________X_XX_XX_X
24. _1509_9_>_FP
CT___TTCCAACC_______________X_XX_XX_X
25. _6B_A25_T2
CT___TTCCAACC_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SCA_5 GC-01-092-5-09
Location: Tree: 1
Notes: 1
 Mars, 2018
2._SCA_5 GC-01-092-5-09
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018
3._SCA_5 GC-01-092-5-09
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
4._SCA_5 GC-01-092-5-09
Location: Tree: 6
Notes: 6
 Mars, 2018
5._SCA_5 GC-01-092-5-09
Location: Tree: 8
Notes: 8
 Mars, 2018
6._SCA_5 GC-01-092-5-09
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018
7._SCA_5 GC-01-092-5-09
Location: Tree: 10
Notes: 10
 Mars, 2018
8._SCA_5 GC-01-092-5-09
Location: Tree: 11
Notes: 11
 Mars, 2018
9._SCA_5 GC-01-092-5-09
Location: Tree: 12
Notes: 12
 Mars, 2018
10._SCA_5 GC-01-092-5-09
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018
11._SCA_5 GC-01-092-5-09
Location: Tree: 14
Notes: 14
 Mars, 2018
12._SCA_5 GC-01-092-5-09
Location: Tree: 15
Notes: 15
 Mars, 2018
13._SCA_5
Location: 1509 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
14._SCA_5
Location: 1509 6
 Dapeng Zhang, 2016
15._SCA_5
Location: 1509 8
 Dapeng Zhang, 2016
16._SCA_5
Location: 1509 10
 Dapeng Zhang, 2016
17._SCA_5
Location: 1509 11
 Dapeng Zhang, 2016
18._SCA_5
Location: 1509 12
 Dapeng Zhang, 2016
19._SCA_5
Location: 1509 14
 Dapeng Zhang, 2016
20._SCA_5
Location: 1509 15
 Dapeng Zhang, 2016
21._SCA_5
Location: 1509 13 > F
 Dapeng Zhang, 2016
22._SCA_5
Location: 1509 4 > FP
 Dapeng Zhang, 2016
23._SCA_5
Location: 1509 5 > FP
 Dapeng Zhang, 2016
24._SCA_5
Location: 1509 9 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

25._SCA_5
Location: 6B A25 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133