SNP Profiles of "SPA 5 [COL]" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
2. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
3. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
4. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
5. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
6. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
7. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
8. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
9. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
10. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
11. _GC-01-054-3-09	GG	GG	TT	AG	CC	CT	CC	TT	AC	GT	CC	TT	GG	AC
12. _1309_2	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
13. _1309_4	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
14. _1309_7	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
15. _1309_8	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
16. _1309_10	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
17. _1309_11	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
18. _1309_15	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
19. _1309_16	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
20. _1309_1_>_FP	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
21. _1309_13_>_F	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
22. _1309_6_>_FP	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
23. _Cabiria	GG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
2. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
3. _GC-01-054-3-09	CG	AA	GG	___	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
4. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
5. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
6. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
7. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
8. _GC-01-054-3-09	CG	AA	GG	CT	AA	___	AG	AA	CC	GG	GG	AA	CC	AA
9. _GC-01-054-3-09	CG	AA	GG	CT	AA	___	AG	AA	CC	GG	GG	AA	CC	AA
10. _GC-01-054-3-09	CG	AA	GG	CT	AA	___	AG	AA	CC	GG	GG	AA	CC	AA
11. _GC-01-054-3-09	CG	AA	GG	CT	AA	AG	AG	AA	CC	GG	GG	AA	CC	AA
12. _1309_2	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
13. _1309_4	CG	AA	___	___	___	___	___	AA	___	___	GG	___	___	AA
14. _1309_7	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
15. _1309_8	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
16. _1309_10	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
17. _1309_11	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
18. _1309_15	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
19. _1309_16	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
20. _1309_1_>_FP	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
21. _1309_13_>_F	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
22. _1309_6_>_FP	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA
23. _Cabiria	___	AA	___	CT	___	___	___	AA	___	___	GG	___	___	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
2. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
3. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
4. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
5. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
6. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
7. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
8. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
9. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
10. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
11. _GC-01-054-3-09	AC	CC	CT	GG	GT	AG	CG	AC	CC	AG	CC	AA	AG	AA
12. _1309_2	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
13. _1309_4	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
14. _1309_7	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
15. _1309_8	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
16. _1309_10	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
17. _1309_11	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
18. _1309_15	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
19. _1309_16	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
20. _1309_1_>_FP	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
21. _1309_13_>_F	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
22. _1309_6_>_FP	___	CC	CT	___	GT	___	CG	AC	___	___	CC	AA	___	___
23. _Cabiria	___	CC	CT	___	___	___	CG	AC	___	___	CC	AG	___	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
2. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
3. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
4. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
5. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
6. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
7. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
8. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
9. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
10. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
11. _GC-01-054-3-09	CT	CC	GT	GG	TT	GT	TT	AC	GG	CG	CG	CT	CC	GG
12. _1309_2	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
13. _1309_4	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
14. _1309_7	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
15. _1309_8	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
16. _1309_10	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
17. _1309_11	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
18. _1309_15	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
19. _1309_16	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
20. _1309_1_>_FP	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
21. _1309_13_>_F	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
22. _1309_6_>_FP	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___
23. _Cabiria	___	___	GT	___	___	___	___	___	___	CG	___	CT	___	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
2. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
3. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
4. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
5. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
6. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
7. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	___	GG	AA	CC
8. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
9. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
10. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
11. _GC-01-054-3-09	CT	GG	CC	AA	TT	AA	CC	TT	CG	CC	AG	GG	AA	CC
12. _1309_2	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
13. _1309_4	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
14. _1309_7	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
15. _1309_8	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
16. _1309_10	CT	GG	___	AA	TT	AA	___	___	___	CC	___	___	AA	___
17. _1309_11	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
18. _1309_15	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
19. _1309_16	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
20. _1309_1_>_FP	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
21. _1309_13_>_F	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
22. _1309_6_>_FP	CT	GG	___	AA	TT	AA	___	___	___	CC	AG	___	AA	___
23. _Cabiria	CT	GG	___	___	TT	___	___	___	___	___	AG	___	AA	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
2. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
3. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
4. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
5. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
6. _GC-01-054-3-09	GG	TT	CT	___	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
7. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
8. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
9. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
10. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	___	CT
11. _GC-01-054-3-09	GG	TT	CT	TT	TT	CC	GG	CC	GT	CT	TT	___	GG	CT
12. _1309_2	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
13. _1309_4	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
14. _1309_7	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
15. _1309_8	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
16. _1309_10	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
17. _1309_11	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
18. _1309_15	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
19. _1309_16	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
20. _1309_1_>_FP	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
21. _1309_13_>_F	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
22. _1309_6_>_FP	___	___	CT	___	___	CC	___	___	GT	CT	___	___	___	CT
23. _Cabiria	___	___	___	___	___	CC	___	___	GT	CT	___	CC	___	CT

	85	86	87	88	89	90	91	92	93	94
1. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
2. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
3. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
4. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
5. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
6. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
7. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
8. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
9. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
10. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
11. _GC-01-054-3-09	CT	TT	CC	AA	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X
12. _1309_2	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
13. _1309_4	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
14. _1309_7	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
15. _1309_8	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
16. _1309_10	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
17. _1309_11	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
18. _1309_15	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
19. _1309_16	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
20. _1309_1_>_FP	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
21. _1309_13_>_F	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
22. _1309_6_>_FP	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X	X_X	X_X
23. _Cabiria	___	TT	CC	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X

Mars Center for Cocoa Science Brazil

1._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 1

Notes: 1 > FP1

2._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 2

Notes: 2

3._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 4

Notes: 4

4._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 6

Notes: 6 > FP4

5._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 7

Notes: 7

6._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 8

Notes: 8

7._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 10

Notes: 10

8._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 11

Notes: 11

9._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 13

Notes: 13 > FP3

10._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 15

Notes: 15

11._SPA_5_[COL] GC-01-054-3-09

Location: Tree: 16

Notes: 16

12._SPA_5_[COL]

Location: 1309 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._SPA_5_[COL]

Location: 1309 4

Dapeng Zhang, 2016

14._SPA_5_[COL]

Location: 1309 7

Dapeng Zhang, 2016

15._SPA_5_[COL]

Location: 1309 8

Dapeng Zhang, 2016

16._SPA_5_[COL]

Location: 1309 10

Dapeng Zhang, 2016

17._SPA_5_[COL]

Location: 1309 11

Dapeng Zhang, 2016

18._SPA_5_[COL]

Location: 1309 15

Dapeng Zhang, 2016

19._SPA_5_[COL]

Location: 1309 16

Dapeng Zhang, 2016

20._SPA_5_[COL]

Location: 1309 1 > FP

Dapeng Zhang, 2016

21._SPA_5_[COL]

Location: 1309 13 > F

Dapeng Zhang, 2016

22._SPA_5_[COL]

Location: 1309 6 > FP

Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

23._SPA_5_[COL]

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP521	30	TcSNP529
31	TcSNP534	32	TcSNP547	33	TcSNP560	34	TcSNP561	35	TcSNP577
36	TcSNP591	37	TcSNP602	38	TcSNP606	39	TcSNP619	40	TcSNP645
41	TcSNP653	42	TcSNP689	43	TcSNP701	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP872	53	TcSNP878	54	TcSNP891	55	TcSNP894
56	TcSNP899	57	TcSNP917	58	TcSNP929	59	TcSNP944	60	TcSNP953
61	TcSNP994	62	TcSNP998	63	TcSNP999	64	TcSNP1034	65	TcSNP1041
66	TcSNP1060	67	TcSNP1062	68	TcSNP1063	69	TcSNP1075	70	TcSNP1096
71	TcSNP1111	72	TcSNP1126	73	TcSNP1144	74	TcSNP1149	75	TcSNP1156
76	TcSNP1165	77	TcSNP1175	78	TcSNP1242	79	TcSNP1253	80	TcSNP1270
81	TcSNP1309	82	TcSNP1350	83	TcSNP1383	84	TcSNP1414	85	TcSNP1439
86	TcSNP1442	87	TcSNP1458	88	TcSNP1484	89	TcSNP1520	90	Tcm001s00947643
91	Tcm002s20575712	92	Tcm003s01336581	93	Tcm003s07402719	94	Tcm006s26664133