SNP Profiles of GU 168 /H View Data

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_Input profile	AA	TT	GG	GG	AA	TT	GG	TT	TT	AA	TT	CC	TT	GG
1._RUQ_223	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
2._RUQ_223	__	__	GG	__	__	__	__	TT	__	__	__	CC	__	GG
3._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
4._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
5._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
6._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
7._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
8._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
9._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
10._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
11._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
12._GC-03-023-2-12	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
13._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
14._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
15._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
16._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
17._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
18._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
19._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
20._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
21._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
22._GU_168_/H	__	__	CC	__	__	__	__	TT	__	__	__	CC	__	GG
23._GC-03-23-2-12	__	__	GG	__	__	__	__	AA	__	__	__	__	__	GG
24._GU_168_/H	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA
25._GC-03-023-2-12	__	__	GG	__	__	__	__	TT	__	__	__	TT	__	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	TT	CC	AG	CC	GG	GG	CC	AA	AA	TT	CT	AA
1._RUQ_223	__	__	__	CC	AG	__	__	GG	__	__	AA	__	__	AA
2._RUQ_223	__	__	__	__	AG	__	__	GG	__	__	__	__	__	__
3._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
4._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
5._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
6._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
7._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
8._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
9._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
10._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
11._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
12._GC-03-023-2-12	__	__	__	CC	GG	__	GG	GG	GG	__	AA	__	__	AA
13._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
14._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
15._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
16._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
17._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
18._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
19._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
20._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
21._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
22._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
23._GC-03-23-2-12	__	__	__	__	GG	__	GG	CC	CC	__	AA	__	__	AA
24._GU_168_/H	__	__	__	__	GG	__	__	GG	__	__	__	__	__	__
25._GC-03-023-2-12	__	__	__	TT	GG	__	__	GG	GG	__	AA	__	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	CC	CC	AA	CC	GG	TT	CC	CC	TT	CC	AG	AA	CC
1._RUQ_223	GG	CC	__	__	__	__	__	CC	CC	__	CC	__	AA	__
2._RUQ_223	GG	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__
3._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
4._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
5._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
6._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
7._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
8._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
9._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
10._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
11._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	__	__	AA	__
12._GC-03-023-2-12	GG	CC	__	AG	__	__	__	CC	CC	__	CC	__	AA	__
13._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
14._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
15._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
16._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
17._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
18._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
19._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
20._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
21._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	CC	__	AA	__
22._GU_168_/H	GG	__	__	AG	__	__	__	__	CC	__	__	__	AA	__
23._GC-03-23-2-12	CC	__	__	__	__	__	__	GG	CC	__	CC	__	AA	__
24._GU_168_/H	GG	__	__	GG	__	__	__	__	CC	__	CC	__	CC	__
25._GC-03-023-2-12	GG	CC	__	GG	__	__	__	TT	CC	__	CC	__	CC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	TT	AA	GG	AA	CC	GG	GG	GG	CC	AA	AA	TT	GG
1._RUQ_223	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
2._RUQ_223	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
3._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
4._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
5._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
6._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
7._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
8._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
9._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
10._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
11._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
12._GC-03-023-2-12	__	__	__	GG	__	__	GG	__	__	__	__	__	__	__
13._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
14._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
15._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
16._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
17._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
18._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
19._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
20._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
21._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
22._GU_168_/H	__	__	__	__	__	__	GG	__	__	__	AA	__	__	__
23._GC-03-23-2-12	__	__	__	GG	__	__	GG	__	__	__	AA	__	__	__
24._GU_168_/H	__	__	__	__	__	__	AA	__	__	__	AC	__	__	__
25._GC-03-023-2-12	__	__	__	GG	__	__	AA	__	__	__	AC	__	__	__

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_Input profile	CC	TT	AA	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_223	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_223	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
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21._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-03-23-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._GU_168_/H	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
25._GC-03-023-2-12	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_168_/H RUQ_223

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

1._GU_168_/H RUQ_223

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._GU_168_/H RUQ_223

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

4._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

5._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP1

6._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

7._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._GU_168_/H GC-03-023-2-12

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

11._GU_168_/H GC-03-023-2-12

85 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP3

12._GU_168_/H GC-03-023-2-12

85 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._GU_168_/H

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 2

Dapeng Zhang, 2016

14._GU_168_/H

84.6 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 4

Dapeng Zhang, 2016

15._GU_168_/H

84.6 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 6

Dapeng Zhang, 2016

16._GU_168_/H

84.6 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3212 13

Dapeng Zhang, 2016

17._GU_168_/H

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 15

Dapeng Zhang, 2016

18._GU_168_/H

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 1 > FP

Dapeng Zhang, 2016

19._GU_168_/H

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 10 > F

Dapeng Zhang, 2016

20._GU_168_/H

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 7 > FP

Dapeng Zhang, 2016

21._GU_168_/H

83.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 3

Dapeng Zhang, 2016

22._GU_168_/H

83.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 12 > F

Dapeng Zhang, 2016

23._GU_168_/H GC-03-23-2-12

73.5 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 3, Block: 2, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

24._GU_168_/H

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3212 16

Dapeng Zhang, 2016

25._GU_168_/H GC-03-023-2-12

50 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13