SNP Profiles of SIAL 98 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
1._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
2._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
3._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
4._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
5._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
6._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
7._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
8._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
9._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
10._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
11._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
12._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
13._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
14._BE_10___	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
15._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
16._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
17._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
18._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
19._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
20._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
21._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
22._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
23._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
24._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG
25._BE_10___	CC	CC	AA	AA	TT	CC	AA	GG	AA	CC	GG	TT	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
1._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	__
2._BE_10___	__	__	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
3._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	__
4._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
5._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
6._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
7._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
8._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
9._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
10._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
11._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
12._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
13._BE_10___	__	TT	CC	__	AA	__	TT	__	CC	CC	GG	AA	TT	CC
14._BE_10___	__	TT	CC	__	__	__	__	__	CC	CC	GG	AA	TT	CC
15._BE_10___	TT	__	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
16._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
17._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
18._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
19._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
20._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
21._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
22._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
23._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
24._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC
25._BE_10___	TT	TT	CC	TT	AA	GG	TT	TT	CC	CC	GG	AA	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
1._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
2._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
3._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
4._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
5._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
6._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
7._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
8._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
9._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
10._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
11._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
12._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
13._BE_10___	TT	__	__	AA	CC	AA	__	CC	GG	__	__	TT	__	__
14._BE_10___	TT	__	__	AA	CC	AA	__	__	GG	__	__	TT	__	__
15._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
16._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
17._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
18._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
19._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
20._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
21._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
22._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
23._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
24._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG
25._BE_10___	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	TT	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
1._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
2._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
3._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
4._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
5._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
6._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
7._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
8._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
9._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
10._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
11._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
12._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
13._BE_10___	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
14._BE_10___	AA	__	__	__	GG	__	__	__	__	__	__	TT	__	CC
15._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
16._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
17._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
18._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
19._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
20._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
21._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
22._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
23._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
24._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC
25._BE_10___	AA	TT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
1._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
2._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
3._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
4._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
5._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
6._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
7._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
8._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
9._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
10._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
11._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
12._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
13._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
14._BE_10___	AA	__	__	TT	__	__	GG	__	__	__	__	__	__	__
15._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
16._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
17._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
18._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
19._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
20._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
21._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
22._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
23._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
24._BE_10___	AA	CC	TT	TT	AA	AA	GG	GG	TT	TT	TT	TT	AA	GG
25._BE_10___	AA	CC	TT	TT	AA	__	GG	GG	TT	TT	TT	TT	AA	GG

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
1._BE_10___	__	GG	CC	__	__	__	__	GG	__	AA	TT	GG	X_X	X_X
2._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
3._BE_10___	__	GG	CC	CC	AA	CC	__	GG	CC	AA	TT	GG	X_X	X_X
4._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
5._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
6._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
7._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
8._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
9._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
10._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
11._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
12._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
13._BE_10___	__	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X
14._BE_10___	__	GG	CC	__	__	__	__	__	__	AA	TT	GG	X_X	X_X
15._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
16._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
17._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
18._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
19._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
20._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
21._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
22._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
23._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
24._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X
25._BE_10___	__	GG	CC	CC	AA	CC	TT	GG	CC	AA	TT	GG	X_X	X_X

Input profile: BE_10 GC-08-90-2-13

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership - Sample

1._BE_10

51.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 3 > FP

Dapeng Zhang, 2016

2._BE_10

50 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 2 > FP

Dapeng Zhang, 2016

3._BE_10 GC-08-090-2-13

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

4._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 5

Dapeng Zhang, 2016

5._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 6

Dapeng Zhang, 2016

6._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 7

Dapeng Zhang, 2016

7._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 8

Dapeng Zhang, 2016

8._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 9

Dapeng Zhang, 2016

9._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 11

Dapeng Zhang, 2016

10._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 13

Dapeng Zhang, 2016

11._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 14

Dapeng Zhang, 2016

12._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 1 > FP

Dapeng Zhang, 2016

13._BE_10

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 4 > FP

Dapeng Zhang, 2016

14._BE_10

48.3 %
29 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/467 T1

Dapeng Zhang, 2016

15._BE_10 GC-08-090-2-13

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

16._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

17._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

18._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

19._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

20._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

21._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

22._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

23._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

24._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

25._BE_10 GC-08-090-2-13

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998