SNP Profiles of SIAL 169 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
1._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
2._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
3._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
4._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
5._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
6._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
7._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
8._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
9._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
10._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
11._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
12._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
13._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
14._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
15._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
16._GC-01-041-2-18	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AA	TT	TT	GG
17._SIAL_169	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	GG	AA	AA	GG	AA	AA	AC	GG	CC	AG	AA	GG
1._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
2._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	__	AC	CC	GG	AG	TT	CC
3._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	__	AC	CC	GG	AG	TT	CC
4._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
5._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
6._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
7._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
8._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
9._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
10._SIAL_169	__	TT	CC	__	AA	__	TT	__	AC	CC	GG	AG	TT	CC
11._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	TT	AC	CC	GG	AG	TT	CC
12._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	TT	AC	CC	GG	AG	TT	CC
13._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	TT	AC	CC	GG	AG	TT	CC
14._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	TT	AC	CC	GG	AG	TT	CC
15._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	TT	AC	CC	GG	AG	TT	CC
16._GC-01-041-2-18	CT	TT	CC	TT	AA	GG	TT	TT	AC	CC	GG	AG	TT	CC
17._SIAL_169	__	TT	CC	__	AA	__	TT	__	AA	TT	GG	AG	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	GG	GG	AA
1._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
2._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
3._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
4._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
5._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
6._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
7._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
8._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
9._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
10._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA
11._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
12._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
13._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
14._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
15._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
16._GC-01-041-2-18	TT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	GG	GG	AA
17._SIAL_169	TT	__	__	AA	CC	AA	__	CC	GG	__	__	__	__	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AG	GG	GG	GG	TT	GG	AG	CC	CC	GG	AA	AA	CG	AC
1._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
2._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
3._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
4._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
5._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
6._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
7._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
8._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
9._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
10._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG	AC
11._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
12._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
13._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
14._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
15._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
16._GC-01-041-2-18	CT	GG	GG	GG	TT	CC	__	CC	CC	GG	TT	AA	CG	AC
17._SIAL_169	__	__	__	GG	__	__	__	__	CC	__	TT	__	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AA	AA	GG	AA	CC	GG	AA	AA	AC	AA	AA	CC	GG
1._SIAL_169	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
2._GC-01-041-2-18	CC	TT	__	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
3._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
4._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
5._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
6._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
7._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
8._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
9._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
10._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
11._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
12._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
13._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
14._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
15._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
16._GC-01-041-2-18	CC	TT	TT	AA	AA	GG	GG	TT	TT	GT	TT	AA	GG	__
17._SIAL_169	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	AA	CC	AA	CG	GG	AA	AA	GG	X_X	X_X	X_X
1._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
2._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
3._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
4._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
5._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
6._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
7._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
8._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
9._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
10._SIAL_169	GG	CC	__	__	__	TT	CG	__	AA	TT	GG	X_X	X_X	X_X
11._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
12._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
13._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
14._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
15._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
16._GC-01-041-2-18	GG	CC	CC	AA	CC	TT	CG	CC	AA	TT	GG	X_X	X_X	X_X
17._SIAL_169	GG	CC	__	__	__	TT	GG	__	AA	TT	GG	X_X	X_X	X_X

Input profile: SIAL_169 GC-01-41-2-18

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 14, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

1._SIAL_169

48.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 9

Dapeng Zhang, 2016

2._SIAL_169 GC-01-041-2-18

48.1 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._SIAL_169 GC-01-041-2-18

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 8 > FP

Dapeng Zhang, 2016

5._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 2 > FP

Dapeng Zhang, 2016

6._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 13 > F

Dapeng Zhang, 2016

7._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 12 > F

Dapeng Zhang, 2016

8._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 10

Dapeng Zhang, 2016

9._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 6

Dapeng Zhang, 2016

10._SIAL_169

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 4

Dapeng Zhang, 2016

11._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

12._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

13._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP4

14._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

15._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

17._SIAL_169

41.2 %
34 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998