SNP Profiles of PA 300   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
1._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
2._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
3._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
4._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
5._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
6._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
7._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
8._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
9._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
10._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
11._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
12._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
13._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
14._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
15._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
16._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
17._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
18._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
19._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
20._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
21._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
22._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
23._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
24._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
25._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
26._GC-01-120-6-17
CCAG_CCTTCCTTTTCCCCAAAGCCAA
27._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
28._GC-01-120-6-17
CCAGCGCC_CCTTTTCCCCAAAGCCAA
29._PA_300_[PER]
CCAG_CCTTCCTTTTCCCCAAAGCCAA
30._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
31._PA_300_[PER]
CCAGCGCC_CCTTTTCCCCAAAGCCAA
32._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
33._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
34._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
35._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
36._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
37._PA_300_[PER]
CCAGCGCCTTCCTTTTCC_AAAGCCAA
38._PA_300_[PER]
CCAGCGCCTTCCTTTTCC_AAAGCCAA
39._GC-01-120-6-17
GGAGCGGGAACCAAAA__AAAGGGAA
 1516171819202122232425262728
_Input profile
CCAACGCCCCGGGGAGTTCCGGGGTTCC
1._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
2._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
3._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
4._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
5._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
6._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
7._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
8._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
9._GC-08-166-4-09
CCAACGCCCCGGGGAGTTCCGGGGTTCC
10._GC-08-166-4-09
CCAACGCCCCGGGGAGTTCCGGGGTTCC
11._GC-08-166-4-09
CCAACGCCCCGGGGAGTTCCGGGGTTCC
12._GC-08-166-4-09
CCAACGCCCCGGGGAGTTCCGGGGTTCC
13._GC-08-166-4-09
CCAACGCCCCGGGGAGTTCCGGGGTTCC
14._GC-08-166-4-09
CCAACGCCCCGGGGAGTTCCGGGGTTCC
15._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
16._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
17._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
18._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
19._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
20._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
21._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
22._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
23._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
24._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGG_CC
25._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
26._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
27._GC-01-120-6-17
CCAACGCCCCGG_AGTTCCGGGGTTCC
28._GC-01-120-6-17
CCAACGCCCCGGGGAGTTCCGGGGTTCC
29._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
30._PA_300_[PER]
CCAACGCCCCGG_AGTTCCGGGGTTCC
31._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
32._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGG_CC
33._PA_300_[PER]
CCAACGCCCCGGGGAGTTCCGGGGTTCC
34._PA_300_[PER]
CCAACGCCCCGGGGAATTCCGGGGTTCC
35._PA_300_[PER]
CCAACGCCCCGGGGAATTCCGGGGTTCC
36._PA_300_[PER]
CCAACGCCCCGGGGAATTCCGGGGTTCC
37._PA_300_[PER]
CCAACGCCCCGGGGAATTCCGGGGTTCC
38._PA_300_[PER]
CCAACGCCCCGGGGAATTCCGGGGTTCC
39._GC-01-120-6-17
GGAACGGGGGCCCC_AACCGGCC_CC
 293031323334353637383940  
_Input profile
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
1._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
2._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
3._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
4._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
5._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
6._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
7._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
8._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
9._GC-08-166-4-09
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
10._GC-08-166-4-09
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
11._GC-08-166-4-09
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
12._GC-08-166-4-09
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
13._GC-08-166-4-09
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
14._GC-08-166-4-09
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
15._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
16._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
17._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
18._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
19._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
20._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
21._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
22._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
23._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
24._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
25._GC-01-120-6-17
AGGGAACCGGCCCC_GGAAATGGX_XX_X
26._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
27._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
28._GC-01-120-6-17
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
29._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
30._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
31._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
32._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
33._PA_300_[PER]
AGGGAACCGGCCCC_GGAAATGGX_XX_X
34._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
35._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
36._PA_300_[PER]
AGGGAACCGGCCCCCTGGAAATGGX_XX_X
37._PA_300_[PER]
AGGGAACCGG_CCCTGGAAATGGX_XX_X
38._PA_300_[PER]
AGGGAACCGG_CCCTGGAAATGGX_XX_X
39._GC-01-120-6-17
_GGAAGGGGGGCCAGCCAAATGGX_XX_X

Input profile: PA_300_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 1617 6 > FP
 Dapeng Zhang, 2016

1._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 12
 Dapeng Zhang, 2016

2._PA_300_[PER] GC-01-120-6-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

3._PA_300_[PER] GC-01-120-6-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._PA_300_[PER] GC-01-120-6-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 9
 Dapeng Zhang, 2016

6._PA_300_[PER] GC-01-120-6-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

7._PA_300_[PER] GC-01-120-6-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._PA_300_[PER] GC-01-120-6-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._PA_300_[PER] GC-08-166-4-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._PA_300_[PER] GC-08-166-4-09

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._PA_300_[PER] GC-08-166-4-09

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._PA_300_[PER] GC-08-166-4-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._PA_300_[PER] GC-08-166-4-09

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._PA_300_[PER] GC-08-166-4-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 7
 Dapeng Zhang, 2016

16._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 7
 Dapeng Zhang, 2016

17._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 9
 Dapeng Zhang, 2016

18._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 13
 Dapeng Zhang, 2016

19._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 11 > F
 Dapeng Zhang, 2016

20._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 14 > F
 Dapeng Zhang, 2016

21._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 2
 Dapeng Zhang, 2016

22._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 5
 Dapeng Zhang, 2016

23._PA_300_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 6
 Dapeng Zhang, 2016

24._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

29._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 3
 Dapeng Zhang, 2016

31._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 8
 Dapeng Zhang, 2016

32._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 10
 Dapeng Zhang, 2016

33._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 1 > FP
 Dapeng Zhang, 2016

34._PA_300_[PER]

98.8 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P35 703
 Dapeng Zhang, 2016

35._PA_300_[PER]

98.8 %
40 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 191 I-035
 Dapeng Zhang, 2016

36._PA_300_[PER]

98.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Rep1 C0186 50
 Dapeng Zhang, 2016

37._PA_300_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E407 T14
 Dapeng Zhang, 2016

38._PA_300_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D544
 Dapeng Zhang, 2016

39._PA_300_[PER] GC-01-120-6-17

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 17, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25