SNP Profiles of SC 1 [COL] View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
1._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
2._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
4._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._GC-01-119-6-16	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._GC-01-119-6-16	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._GC-01-119-6-16	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
9._GC-01-119-6-16	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
10._GC-01-119-6-16	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
11._GC-01-119-6-16	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
12._RUQ_41	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
13._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
14._SC_1_[COL]	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
1._SC_1_[COL]	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
2._SC_1_[COL]	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
3._SC_1_[COL]	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
4._SC_1_[COL]	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
5._SC_1_[COL]	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
6._GC-01-119-6-16	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
7._GC-01-119-6-16	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
8._GC-01-119-6-16	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
9._GC-01-119-6-16	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
10._GC-01-119-6-16	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
11._GC-01-119-6-16	GT	CG	CC	CT	GG	GT	GG	CC	TT	GG	AA	CT	AA	CT
12._RUQ_41	GT	CG	CC	CT	AG	GT	GG	CC	TT	GG	AA	CT	AA	CT
13._SC_1_[COL]	GT	CG	CC	CT	AG	GT	GG	CC	TT	GG	AA	CT	AA	CT
14._SC_1_[COL]	GT	CG	CC	CT	AG	GT	GG	CC	TT	GG	AA	CT	AA	CT

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
1._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
2._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
3._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
4._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
5._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
6._GC-01-119-6-16	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
7._GC-01-119-6-16	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
8._GC-01-119-6-16	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
9._GC-01-119-6-16	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
10._GC-01-119-6-16	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
11._GC-01-119-6-16	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
12._RUQ_41	AA	AA	CT	CT	GT	CC	AA	TT	CT	_	AG	CT	X_X	X_X
13._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X
14._SC_1_[COL]	AA	AA	CT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X

Input profile: SC_1_[COL]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 12

Dapeng Zhang, 2016

1._SC_1_[COL]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._SC_1_[COL]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 5

Dapeng Zhang, 2016

3._SC_1_[COL]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 13

Dapeng Zhang, 2016

4._SC_1_[COL]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 2 > FP

Dapeng Zhang, 2016

5._SC_1_[COL]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 9 > FP

Dapeng Zhang, 2016

6._SC_1_[COL] GC-01-119-6-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._SC_1_[COL] GC-01-119-6-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._SC_1_[COL] GC-01-119-6-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._SC_1_[COL] GC-01-119-6-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

10._SC_1_[COL] GC-01-119-6-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

11._SC_1_[COL] GC-01-119-6-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

12._SC_1_[COL] RUQ_41

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._SC_1_[COL]

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C274 T1

Dapeng Zhang, 2016

14._SC_1_[COL]

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C319 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520