SNP Profiles of SIAL 169 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
1._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
2._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
3._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
4._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
5._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
6._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
7._GC-01-041-2-18	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
8._SIAL_169	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
9._SIAL_169	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
10._SIAL_169	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
11._SIAL_169	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
12._SIAL_169	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
13._SIAL_169	GG	TT	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
14._GC-01-041-2-18	GG	__	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
15._SIAL_169	GG	__	AC	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	TT
16._SIAL_169	GG	TT	AA	TT	CC	AA	CC	AA	CC	AA	GG	AA	CC	CT
17._GC-01-41-2-18	GG	__	AC	AA	GG	AA	GG	AA	GG	AA	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
1._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
2._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
3._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
4._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
5._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
6._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
7._GC-01-041-2-18	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
8._SIAL_169	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
9._SIAL_169	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
10._SIAL_169	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
11._SIAL_169	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
12._SIAL_169	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
13._SIAL_169	TT	CG	AC	TT	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
14._GC-01-041-2-18	TT	CG	AC	__	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
15._SIAL_169	TT	CG	AC	__	GG	GG	GG	CC	TT	CG	AA	TT	GG	CC
16._SIAL_169	TT	GG	AA	TT	AA	GG	GG	CC	TT	GG	AA	TT	GG	CC
17._GC-01-41-2-18	AA	CG	AC	AA	__	CC	CC	GG	AA	CG	AA	AA	GG	GG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
1._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
2._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
3._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
4._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
5._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
6._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
7._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
8._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
9._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
10._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
11._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
12._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
13._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
14._GC-01-041-2-18	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
15._SIAL_169	AA	AA	CT	CC	TT	CC	AA	TT	CC	GG	AG	TT	X_X	X_X
16._SIAL_169	AA	AA	TT	CC	TT	CC	AA	TT	TT	GG	AG	TT	X_X	X_X
17._GC-01-41-2-18	AA	AA	__	__	AA	GG	AA	AA	GG	CC	AG	AA	X_X	X_X

Input profile: SIAL_169

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 13 > F

Dapeng Zhang, 2016

1._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

2._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

3._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP4

5._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._SIAL_169 GC-01-041-2-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

8._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 8 > FP

Dapeng Zhang, 2016

9._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 2 > FP

Dapeng Zhang, 2016

10._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 12 > F

Dapeng Zhang, 2016

11._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 10

Dapeng Zhang, 2016

12._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 6

Dapeng Zhang, 2016

13._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._SIAL_169 GC-01-041-2-18

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 9

Dapeng Zhang, 2016

16._SIAL_169

87.5 %
40 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 14, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520