SNP Profiles of SIAL-169 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
1._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
2._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
3._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
4._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
5._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
6._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
7._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
8._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
9._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
10._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
11._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
12._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
13._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
14._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
15._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
16._SIAL_169	AA	AA	CT	AA	__	__	__	__	CC	CC	GG	__	CC	__
17._GC-01-41-2-18	AA	AA	__	AC	GG	GG	__	GG	GG	__	GG	AA	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
1._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
2._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
3._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
4._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
5._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
6._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
7._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	AA	CC	GG	AA
8._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
9._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
10._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
11._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
12._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
13._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
14._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
15._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	AA	__	GG	AA
16._SIAL_169	__	__	AA	__	__	GG	__	__	__	__	AA	__	GG	AA
17._GC-01-41-2-18	TT	CC	AA	CC	__	CG	AG	GG	AA	GG	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
1._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
2._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
3._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
4._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
5._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
6._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
7._GC-01-041-2-18	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC	GG
8._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
9._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
10._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
11._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
12._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
13._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
14._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
15._SIAL_169	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__	__
16._SIAL_169	__	__	__	GG	__	GG	TT	__	__	AG	__	__	__	__
17._GC-01-41-2-18	AA	CC	AA	CG	CC	GG	AA	CC	AA	AG	AA	AA	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
1._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
2._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
3._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
4._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
5._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
6._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
7._GC-01-041-2-18	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT	TT
8._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
9._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
10._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
11._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
12._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
13._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
14._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
15._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
16._SIAL_169	__	CC	__	__	__	__	__	__	__	__	__	CC	TT	__
17._GC-01-41-2-18	__	GG	__	GG	AA	GG	__	GG	GG	AC	AA	GG	AA	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
1._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
2._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
3._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
4._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
5._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
6._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
7._GC-01-041-2-18	AA	CC	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT	GG	TT
8._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
9._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
10._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
11._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
12._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
13._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
14._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
15._SIAL_169	__	CC	CC	AA	GG	__	AC	AA	TT	GG	__	__	GG	TT
16._SIAL_169	__	CC	TT	AA	GG	__	AA	AA	TT	GG	__	__	AA	TT
17._GC-01-41-2-18	AA	GG	GG	AA	GG	GG	AC	AA	AA	CC	GG	__	__	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
1._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
2._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
3._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
4._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
5._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
6._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
7._GC-01-041-2-18	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT	CT	TT	AA
8._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
9._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
10._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
11._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
12._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
13._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
14._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
15._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	CT	__	AA
16._SIAL_169	__	__	__	__	__	CC	GG	__	__	__	TT	TT	__	AA
17._GC-01-41-2-18	AC	AA	CC	AA	__	CC	CC	GG	TT	AA	AA	__	AA	__

	85	86	87	88	89	90
_Input profile	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-041-2-18	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._SIAL_169	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-41-2-18	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SIAL_169 GC-01-041-2-18

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

1._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

2._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

3._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP4

5._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

8._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 8 > FP

Dapeng Zhang, 2016

9._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 2 > FP

Dapeng Zhang, 2016

10._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 13 > F

Dapeng Zhang, 2016

11._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 12 > F

Dapeng Zhang, 2016

12._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 10

Dapeng Zhang, 2016

13._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 9

Dapeng Zhang, 2016

14._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 6

Dapeng Zhang, 2016

15._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 4

Dapeng Zhang, 2016

16._SIAL_169

86.8 %
38 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

48.1 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 14, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP645	70	TcSNP917
71	Tcm003s01336581	72	Tcm003s07402719	73	Tcm001s00947643	74	Tcm006s26664133	75	Tcm002s20575712
76	TcSNP529	77	TcSNP1458	78	TcSNP60	79	TcSNP430	80	TcSNP823
81	TcSNP994	82	TcSNP1144	83	TcSNP1156	84	TcSNP469	85	TcSNP999
86	TcSNP242	87	TcSNP1253	88	TcSNP1414	89	TcSNP154	90	TcSNP240