SNP Profiles of SIAL 169   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._SIAL_169
AAAATTAC____CCCCGG_CC_
9._SIAL_169
AAAATTAC____CCCCGG_CC_
10._SIAL_169
AAAATTAC____CCCCGG_CC_
11._SIAL_169
AAAATTAC____CCCCGG_CC_
12._SIAL_169
AAAATTAC____CCCCGG_CC_
13._SIAL_169
AAAATTAC____CCCCGG_CC_
14._SIAL_169
AAAATTAC____CCCCGG_CC_
15._SIAL_169
AAAATTAC____CCCCGG_CC_
16._SIAL_169
AAAACTAA____CCCCGG_CC_
17._GC-01-41-2-18
AAAA_ACGGGG_GGGG_GGAAGGAG
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGTTAACCGG
1._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
2._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
3._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
4._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
5._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
6._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
7._GC-01-041-2-18
AACCAAGGCCCGCTAATTGG_AACCGG
8._SIAL_169
__AA__CG____TTAA_GG
9._SIAL_169
__AA__CG____TTAA_GG
10._SIAL_169
__AA__CG____TTAA_GG
11._SIAL_169
__AA__CG____TTAA_GG
12._SIAL_169
__AA__CG____TTAA_GG
13._SIAL_169
__AA__CG____TTAA_GG
14._SIAL_169
__AA__CG____TTAA_GG
15._SIAL_169
__AA__CG_____AA_GG
16._SIAL_169
__AA__GG____TTAA_GG
17._GC-01-41-2-18
TTCCAACC_CGAGGGAAGG_AAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAACGCCGGTTGGTTAGTTAACC
1._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
2._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
3._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
4._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
5._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
6._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
7._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
8._SIAL_169
AA___CG_GGTT__AG___
9._SIAL_169
AA___CG_GGTT__AG___
10._SIAL_169
AA___CG_GGTT__AG___
11._SIAL_169
AA___CG_GGTT__AG___
12._SIAL_169
AA___CG_GGTT__AG___
13._SIAL_169
AA___CG_GGTT__AG___
14._SIAL_169
AA___CG_GGTT__AG___
15._SIAL_169
AA___CG_GGTT__AG___
16._SIAL_169
AA___GG_GGTT__AG___
17._GC-01-41-2-18
AAAACCAACGCCGGAACCAAAGAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGGTTTCCTT
1._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
2._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
3._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
4._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
5._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
6._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
7._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._SIAL_169
__CC_________CCTT
9._SIAL_169
__CC_________CCTT
10._SIAL_169
__CC_________CCTT
11._SIAL_169
__CC_________CCTT
12._SIAL_169
__CC_________CCTT
13._SIAL_169
__CC_________CCTT
14._SIAL_169
__CC_________CCTT
15._SIAL_169
__CC_________CCTT
16._SIAL_169
__CC_________CCTT
17._GC-01-41-2-18
CC_GG_GGAAGG_GGGGACAAGGAA
 5758596061626364656667686970
_Input profile
TTAACCCCAAGGGGACAATTGGGGTTCC
1._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTTCC
2._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTTCC
3._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTTCC
4._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTTCC
5._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTTCC
6._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTTCC
7._GC-01-041-2-18
TTAACCCCAAGGGGACAATTGGGGTT_
8._SIAL_169
__CCCCAAGG_ACAATTGG___
9._SIAL_169
__CCCCAAGG_ACAATTGG___
10._SIAL_169
__CCCCAAGG_ACAATTGG___
11._SIAL_169
__CCCCAAGG_ACAATTGG___
12._SIAL_169
__CCCCAAGG_ACAATTGG___
13._SIAL_169
__CCCCAAGG_ACAATTGG___
14._SIAL_169
__CCCCAAGG_ACAATTGG___
15._SIAL_169
__CCCCAAGG_ACAATTGG___
16._SIAL_169
__CCTTAAGG_AAAATTGG___
17._GC-01-41-2-18
AAAAGGGGAAGGGGACAAAACCGG__
 7172737475767778798081828384
_Input profile
GGTTACAACCAAAACCGGCCTTAATTTT
1._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAATTTT
2._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAATTTT
3._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAATTTT
4._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAATTTT
5._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAATTTT
6._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAATTTT
7._GC-01-041-2-18
GGTTACAACCAAAACCGGCCTTAA_TT
8._SIAL_169
GGTT_____CCGG___TTTT
9._SIAL_169
GGTT_____CCGG___TTTT
10._SIAL_169
GGTT_____CCGG___TTTT
11._SIAL_169
GGTT_____CCGG___TTTT
12._SIAL_169
GGTT_____CCGG___TTTT
13._SIAL_169
GGTT_____CCGG___TTTT
14._SIAL_169
GGTT_____CCGG___TTTT
15._SIAL_169
GGTT_____CCGG____TT
16._SIAL_169
AATT_____CCGG___TTTT
17._GC-01-41-2-18
_AAACAACCAA_CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-041-2-18
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
8._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
9._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
10._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
11._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
12._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
13._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
14._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
15._SIAL_169
CT_AA_CCTTTT__X_XX_XX_XX_XX_X
16._SIAL_169
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
17._GC-01-41-2-18
_AA__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: SIAL_169 GC-01-041-2-18

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

4._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

7._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 8 > FP
 Dapeng Zhang, 2016

9._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 2 > FP
 Dapeng Zhang, 2016

10._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 13 > F
 Dapeng Zhang, 2016

11._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 12 > F
 Dapeng Zhang, 2016

12._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 10
 Dapeng Zhang, 2016

13._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 6
 Dapeng Zhang, 2016

14._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 9
 Dapeng Zhang, 2016

16._SIAL_169

87.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240