SNP Profiles of SIAL 169 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
1._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
2._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
3._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
4._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
5._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
6._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
7._GC-01-041-2-18	AA	AA	TT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	CT
8._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
9._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
10._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
11._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
12._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
13._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
14._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
15._SIAL_169	AA	AA	TT	AC	__	__	__	__	CC	CC	GG	__	CC	__
16._SIAL_169	AA	AA	CT	AA	__	__	__	__	CC	CC	GG	__	CC	__
17._GC-01-41-2-18	AA	AA	__	AC	GG	GG	__	GG	GG	__	GG	AA	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
1._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
2._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
3._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
4._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
5._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
6._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	TT	AA	CC	GG
7._GC-01-041-2-18	AA	CC	AA	GG	CC	CG	CT	AA	TT	GG	__	AA	CC	GG
8._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
9._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
10._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
11._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
12._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
13._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
14._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	TT	AA	__	GG
15._SIAL_169	__	__	AA	__	__	CG	__	__	__	__	__	AA	__	GG
16._SIAL_169	__	__	AA	__	__	GG	__	__	__	__	TT	AA	__	GG
17._GC-01-41-2-18	TT	CC	AA	CC	__	CG	AG	GG	AA	GG	__	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
1._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
2._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
3._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
4._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
5._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
6._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
7._GC-01-041-2-18	AA	TT	GG	AA	CG	CC	GG	TT	GG	TT	AG	TT	AA	CC
8._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
9._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
10._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
11._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
12._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
13._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
14._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
15._SIAL_169	AA	__	__	__	CG	__	GG	TT	__	__	AG	__	__	__
16._SIAL_169	AA	__	__	__	GG	__	GG	TT	__	__	AG	__	__	__
17._GC-01-41-2-18	AA	AA	CC	AA	CG	CC	GG	AA	CC	AA	AG	AA	AA	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
1._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
2._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
3._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
4._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
5._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
6._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
7._GC-01-041-2-18	GG	TT	CC	AA	GG	AA	CC	CC	GG	GG	GT	TT	CC	TT
8._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
9._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
10._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
11._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
12._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
13._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
14._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
15._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
16._SIAL_169	__	__	CC	__	__	__	__	__	__	__	__	__	CC	TT
17._GC-01-41-2-18	CC	__	GG	__	GG	AA	GG	__	GG	GG	AC	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AA	CC	TT	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
1._GC-01-041-2-18	TT	AA	CC	TT	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
2._GC-01-041-2-18	TT	AA	CC	TT	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
3._GC-01-041-2-18	TT	AA	CC	TT	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
4._GC-01-041-2-18	TT	AA	CC	TT	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
5._GC-01-041-2-18	TT	AA	CC	TT	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
6._GC-01-041-2-18	TT	AA	CC	__	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
7._GC-01-041-2-18	TT	AA	CC	__	CC	AA	GG	GG	AC	AA	TT	GG	GG	TT
8._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
9._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
10._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
11._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
12._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
13._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
14._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
15._SIAL_169	__	__	CC	__	CC	AA	GG	__	AC	AA	TT	GG	__	__
16._SIAL_169	__	__	CC	__	TT	AA	GG	__	AA	AA	TT	GG	__	__
17._GC-01-41-2-18	AA	AA	GG	AA	GG	AA	GG	GG	AC	AA	AA	CC	GG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
1._GC-01-041-2-18	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
2._GC-01-041-2-18	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
3._GC-01-041-2-18	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
4._GC-01-041-2-18	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
5._GC-01-041-2-18	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
6._GC-01-041-2-18	CC	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	TT
7._GC-01-041-2-18	__	GG	TT	AC	AA	CC	AA	AA	CC	GG	CC	TT	AA	__
8._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
9._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
10._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
11._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
12._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
13._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
14._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	TT
15._SIAL_169	__	GG	TT	__	__	__	__	__	CC	GG	__	__	__	__
16._SIAL_169	__	AA	TT	__	__	__	__	__	CC	GG	__	__	__	TT
17._GC-01-41-2-18	__	__	AA	AC	AA	CC	AA	__	CC	CC	GG	TT	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
1._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
2._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
3._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
4._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
6._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
7._GC-01-041-2-18	TT	CT	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
8._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
9._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
10._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
11._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
12._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
13._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
14._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
15._SIAL_169	TT	CT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
16._SIAL_169	TT	TT	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
17._GC-01-41-2-18	AA	__	AA	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: SIAL_169 GC-01-041-2-18

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

1._SIAL_169 GC-01-041-2-18

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

2._SIAL_169 GC-01-041-2-18

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP4

3._SIAL_169 GC-01-041-2-18

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._SIAL_169 GC-01-041-2-18

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._SIAL_169 GC-01-041-2-18

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

6._SIAL_169 GC-01-041-2-18

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

7._SIAL_169 GC-01-041-2-18

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 8 > FP

Dapeng Zhang, 2016

9._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 2 > FP

Dapeng Zhang, 2016

10._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 13 > F

Dapeng Zhang, 2016

11._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 12 > F

Dapeng Zhang, 2016

12._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 10

Dapeng Zhang, 2016

13._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 6

Dapeng Zhang, 2016

14._SIAL_169

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._SIAL_169

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1214 9

Dapeng Zhang, 2016

16._SIAL_169

87.5 %
40 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

46.8 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 14, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240