SNP Profiles of SAN MIGUEL 3161 [CHA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
1._GC-07-045-2-25	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
2._GC-07-088-5-23	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
3._GC-07-089-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
4._GC-07-089-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
5._GC-07-089-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
6._GC-07-045-2-25	__	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
7._GC-07-088-5-23	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
8._GC-07-088-5-23	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
9._GC-07-89-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
10._GC-07-89-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
11._GC-07-45-2-25	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
12._GC-07-45-2-25	TT	CC	CC	AA	AG	TT	CT	CC	__	AG	CT	TT	TT	TT
13._GC-07-045-2-25	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	CT	CC	TT	AA
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	TT	__	CC	AA	AG	__	AG	GG	__	AG	AG	AA	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
1._GC-07-045-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
2._GC-07-088-5-23	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
3._GC-07-089-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
4._GC-07-089-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
5._GC-07-089-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
6._GC-07-045-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
7._GC-07-088-5-23	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
8._GC-07-088-5-23	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
9._GC-07-89-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
10._GC-07-89-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
11._GC-07-45-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
12._GC-07-45-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CG	AA
13._GC-07-045-2-25	CC	AA	AA	CG	CC	CG	TT	AA	TT	GG	AT	AA	CG	AA
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	AA	AA	GG	CG	__	CG	GG	AA	AA	AG	AA	TT	CG	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
1._GC-07-045-2-25	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
2._GC-07-088-5-23	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
3._GC-07-089-5-24	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
4._GC-07-089-5-24	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
5._GC-07-089-5-24	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
6._GC-07-045-2-25	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
7._GC-07-088-5-23	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
8._GC-07-088-5-23	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
9._GC-07-89-5-24	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
10._GC-07-89-5-24	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
11._GC-07-45-2-25	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
12._GC-07-45-2-25	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG
13._GC-07-045-2-25	TT	TT	AG	CG	CC	AG	GT	GG	GT	AG	CC	AA	CC	GT
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	AA	AA	AG	GG	CC	AA	CC	CC	AA	GG	GG	GG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
1._GC-07-045-2-25	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
2._GC-07-088-5-23	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
3._GC-07-089-5-24	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
4._GC-07-089-5-24	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
5._GC-07-089-5-24	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
6._GC-07-045-2-25	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
7._GC-07-088-5-23	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	__	CC	TT
8._GC-07-088-5-23	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
9._GC-07-89-5-24	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
10._GC-07-89-5-24	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
11._GC-07-45-2-25	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT
12._GC-07-45-2-25	TT	TT	GG	AA	AA	CC	__	GG	GG	__	TT	TT	CC	TT
13._GC-07-045-2-25	AT	CT	AA	GG	AG	CT	CC	GG	AG	GG	TT	CC	CT	TT
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	__	AA	__	AA	AA	GG	__	GG	GG	AA	AG	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
1._GC-07-045-2-25	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
2._GC-07-088-5-23	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
3._GC-07-089-5-24	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
4._GC-07-089-5-24	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
5._GC-07-089-5-24	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
6._GC-07-045-2-25	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
7._GC-07-088-5-23	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
8._GC-07-088-5-23	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
9._GC-07-89-5-24	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
10._GC-07-89-5-24	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
11._GC-07-45-2-25	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
12._GC-07-45-2-25	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC	CC
13._GC-07-045-2-25	AG	CC	CT	CT	AA	GG	GG	CC	AG	TT	GG	GG	TT	CC
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	GG	GG	GG	AA	CC	GG	AG	AC	AA	CC	CC	AG	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
1._GC-07-045-2-25	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
2._GC-07-088-5-23	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
3._GC-07-089-5-24	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
4._GC-07-089-5-24	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
5._GC-07-089-5-24	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
6._GC-07-045-2-25	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
7._GC-07-088-5-23	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
8._GC-07-088-5-23	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
9._GC-07-89-5-24	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
10._GC-07-89-5-24	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
11._GC-07-45-2-25	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC	TT
12._GC-07-45-2-25	AA	TT	CC	GG	__	CC	GG	AA	CC	CC	AA	CC	CC	TT
13._GC-07-045-2-25	AG	TT	CC	AA	CC	AC	AG	AC	CG	CT	TT	AC	TT	TT
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	__	AA	CC	GG	AC	CC	__	AA	GG	GG	AA	CC	GG	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-07-045-2-25	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
2._GC-07-088-5-23	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
3._GC-07-089-5-24	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
4._GC-07-089-5-24	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
5._GC-07-089-5-24	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
6._GC-07-045-2-25	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
7._GC-07-088-5-23	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
8._GC-07-088-5-23	CC	__	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X	X_X
9._GC-07-89-5-24	CC	TT	GG	CC	CC	GG	CT	CC	CC	X_X	X_X	X_X	X_X	X_X
10._GC-07-89-5-24	CC	TT	GG	CC	CC	GG	CT	CC	CC	X_X	X_X	X_X	X_X	X_X
11._GC-07-45-2-25	CC	TT	GG	CC	CC	__	CT	CC	CC	X_X	X_X	X_X	X_X	X_X
12._GC-07-45-2-25	CC	TT	GG	CC	CC	GG	CT	CC	CC	X_X	X_X	X_X	X_X	X_X
13._GC-07-045-2-25	CT	TT	AA	CC	CC	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	__	AA	__	__	GG	__	AG	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

1._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

2._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

3._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

4._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Mars, 2018

5._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

6._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

Mars, 2018

7._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

8._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

9._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 5, Rep: 24, Tree: PL1

Notes: PL1 FP1

Mars, 2018

10._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 5, Rep: 24, Tree: PL2

Notes: PL2 FP3

Mars, 2018

11._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 2, Rep: 25, Tree: PL2

Notes: PL2 FP2

Mars, 2018

12._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 %
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 2, Rep: 25, Tree: PL3

Notes: PL3 FP4

Mars, 2018

13._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

56.5 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Mars, 2018

14._SAN_MIGUEL_3161_[CHA] S.MIG._3161_[CHA]_Fld#_177_Plt#_6

52.6 %
78 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 177, Tree: 6

Notes: TARS_Cacao_collection

Mars, 2018

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240

SNP Profiles of SAN MIGUEL 3161 [CHA] View Data

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Input profile: SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

1._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical 93 shared markers

2._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical 93 shared markers

3._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical 93 shared markers

4._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical 93 shared markers

5._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical 93 shared markers

6._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical 92 shared markers

7._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical 92 shared markers

8._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical 92 shared markers

9._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.8 % 93 shared markers

10._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.8 % 93 shared markers

11._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 % 92 shared markers

12._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 % 89 shared markers

13._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

56.5 % 93 shared markers

14._SAN_MIGUEL_3161_[CHA] S.MIG._3161_[CHA]_Fld#_177_Plt#_6

52.6 % 78 shared markers

identical
93 shared markers

identical
93 shared markers

identical
93 shared markers

identical
93 shared markers

identical
93 shared markers

identical
92 shared markers

identical
92 shared markers

identical
92 shared markers

97.8 %
93 shared markers

97.8 %
93 shared markers

97.8 %
92 shared markers

97.8 %
89 shared markers

56.5 %
93 shared markers

52.6 %
78 shared markers