SNP Profiles of SAN MIGUEL 3161 [CHA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
1._GC-07-045-2-25	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
2._GC-07-088-5-23	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
3._GC-07-089-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
4._GC-07-089-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
5._GC-07-045-2-25	__	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
6._GC-07-045-2-25	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
7._GC-07-088-5-23	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
8._GC-07-088-5-23	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
9._GC-07-89-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
10._GC-07-89-5-24	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
11._GC-07-45-2-25	TT	CC	CC	AA	AG	TT	CT	CC	TT	AG	CT	TT	TT	TT
12._GC-07-45-2-25	TT	CC	CC	AA	AG	TT	CT	CC	__	AG	CT	TT	TT	TT
13._GC-07-045-2-25	AA	CC	CC	GG	GG	TT	CC	CC	CC	GG	CT	CC	TT	AA
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	TT	__	CC	AA	AG	__	AG	GG	__	AG	AG	AA	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
1._GC-07-045-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
2._GC-07-088-5-23	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
3._GC-07-089-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
4._GC-07-089-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
5._GC-07-045-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
6._GC-07-045-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	__	CG
7._GC-07-088-5-23	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
8._GC-07-088-5-23	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
9._GC-07-89-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
10._GC-07-89-5-24	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
11._GC-07-45-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
12._GC-07-45-2-25	AA	AA	GG	CG	CG	CG	CC	AA	TT	AG	AA	TT	CC	CG
13._GC-07-045-2-25	CC	AA	AA	CG	CC	CG	TT	AA	TT	GG	AT	AA	CC	CG
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	AA	AA	GG	CG	__	CG	GG	AA	AA	AG	AA	TT	GG	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
1._GC-07-045-2-25	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
2._GC-07-088-5-23	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
3._GC-07-089-5-24	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
4._GC-07-089-5-24	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
5._GC-07-045-2-25	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
6._GC-07-045-2-25	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
7._GC-07-088-5-23	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
8._GC-07-088-5-23	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
9._GC-07-89-5-24	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
10._GC-07-89-5-24	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
11._GC-07-45-2-25	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
12._GC-07-45-2-25	AA	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
13._GC-07-045-2-25	AA	TT	TT	AG	CG	CC	AG	GT	GG	GT	AG	CC	AA	CC
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	AA	AA	AA	AG	GG	CC	AA	CC	CC	AA	GG	GG	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
1._GC-07-045-2-25	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
2._GC-07-088-5-23	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
3._GC-07-089-5-24	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
4._GC-07-089-5-24	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
5._GC-07-045-2-25	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
6._GC-07-045-2-25	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
7._GC-07-088-5-23	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	__	CC
8._GC-07-088-5-23	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
9._GC-07-89-5-24	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
10._GC-07-89-5-24	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
11._GC-07-45-2-25	GG	TT	TT	GG	AA	AA	CC	AC	GG	GG	TT	TT	TT	CC
12._GC-07-45-2-25	GG	TT	TT	GG	AA	AA	CC	__	GG	GG	__	TT	TT	CC
13._GC-07-045-2-25	GT	AT	CT	AA	GG	AG	CT	CC	GG	AG	GG	TT	CC	CT
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	CC	__	AA	__	AA	AA	GG	__	GG	GG	AA	AG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
1._GC-07-045-2-25	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
2._GC-07-088-5-23	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
3._GC-07-089-5-24	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
4._GC-07-089-5-24	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
5._GC-07-045-2-25	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
6._GC-07-045-2-25	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
7._GC-07-088-5-23	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
8._GC-07-088-5-23	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
9._GC-07-89-5-24	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
10._GC-07-89-5-24	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
11._GC-07-45-2-25	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
12._GC-07-45-2-25	TT	GG	CC	CC	TT	CC	GG	AG	AC	AA	GG	GG	AG	CC
13._GC-07-045-2-25	TT	AG	CC	CT	CT	AA	GG	GG	CC	AG	TT	GG	GG	TT
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	AA	GG	GG	GG	AA	CC	GG	AG	AC	AA	CC	CC	AG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
1._GC-07-045-2-25	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
2._GC-07-088-5-23	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
3._GC-07-089-5-24	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
4._GC-07-089-5-24	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
5._GC-07-045-2-25	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
6._GC-07-045-2-25	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
7._GC-07-088-5-23	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
8._GC-07-088-5-23	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
9._GC-07-89-5-24	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
10._GC-07-89-5-24	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
11._GC-07-45-2-25	CC	AA	TT	CC	GG	AC	CC	GG	AA	CC	CC	AA	CC	CC
12._GC-07-45-2-25	CC	AA	TT	CC	GG	__	CC	GG	AA	CC	CC	AA	CC	CC
13._GC-07-045-2-25	CC	AG	TT	CC	AA	CC	AC	AG	AC	CG	CT	TT	AC	TT
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	__	__	AA	CC	GG	AC	CC	__	AA	GG	GG	AA	CC	GG

	85	86	87	88	89	90	91	92	93	94
_Input profile	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
1._GC-07-045-2-25	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
2._GC-07-088-5-23	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
3._GC-07-089-5-24	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
4._GC-07-089-5-24	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
5._GC-07-045-2-25	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
6._GC-07-045-2-25	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
7._GC-07-088-5-23	TT	CC	TT	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
8._GC-07-088-5-23	TT	CC	__	GG	CC	CC	GG	CT	TT	GG	X_X	X_X	X_X	X_X
9._GC-07-89-5-24	TT	CC	TT	GG	CC	CC	GG	CT	CC	CC	X_X	X_X	X_X	X_X
10._GC-07-89-5-24	TT	CC	TT	GG	CC	CC	GG	CT	CC	CC	X_X	X_X	X_X	X_X
11._GC-07-45-2-25	TT	CC	TT	GG	CC	CC	__	CT	CC	CC	X_X	X_X	X_X	X_X
12._GC-07-45-2-25	TT	CC	TT	GG	CC	CC	GG	CT	CC	CC	X_X	X_X	X_X	X_X
13._GC-07-045-2-25	TT	CT	TT	AA	CC	CC	TT	TT	AT	GG	X_X	X_X	X_X	X_X
14._S.MIG._3161_[CHA]_Fld#_177_Plt#_6	AA	__	AA	__	__	GG	__	AG	AA	GG	X_X	X_X	X_X	X_X

Input profile: SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Mars, 2018

1._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

2._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

3._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

4._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

5._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

Mars, 2018

6._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

7._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

8._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

9._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.9 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 5, Rep: 24, Tree: PL1

Notes: PL1 FP1

Mars, 2018

10._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.9 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 5, Rep: 24, Tree: PL2

Notes: PL2 FP3

Mars, 2018

11._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 2, Rep: 25, Tree: PL2

Notes: PL2 FP2

Mars, 2018

12._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 %
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 2, Rep: 25, Tree: PL3

Notes: PL3 FP4

Mars, 2018

13._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

56.9 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Mars, 2018

14._SAN_MIGUEL_3161_[CHA] S.MIG._3161_[CHA]_Fld#_177_Plt#_6

51.9 %
79 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 177, Tree: 6

Notes: TARS_Cacao_collection

Mars, 2018

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240

SNP Profiles of SAN MIGUEL 3161 [CHA] View Data

Show/Hide Profiles

Input profile: SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

1._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical 94 shared markers

2._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical 94 shared markers

3._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical 94 shared markers

4._SAN_MIGUEL_3161_[CHA] GC-07-089-5-24

identical 94 shared markers

5._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical 93 shared markers

6._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

identical 93 shared markers

7._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical 93 shared markers

8._SAN_MIGUEL_3161_[CHA] GC-07-088-5-23

identical 93 shared markers

9._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.9 % 94 shared markers

10._SAN_MIGUEL_3161_[CHA] GC-07-89-5-24

97.9 % 94 shared markers

11._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 % 93 shared markers

12._SAN_MIGUEL_3161_[CHA] GC-07-45-2-25

97.8 % 90 shared markers

13._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

56.9 % 94 shared markers

14._SAN_MIGUEL_3161_[CHA] S.MIG._3161_[CHA]_Fld#_177_Plt#_6

51.9 % 79 shared markers

identical
94 shared markers

identical
94 shared markers

identical
94 shared markers

identical
94 shared markers

identical
93 shared markers

identical
93 shared markers

identical
93 shared markers

identical
93 shared markers

97.9 %
94 shared markers

97.9 %
94 shared markers

97.8 %
93 shared markers

97.8 %
90 shared markers

56.9 %
94 shared markers

51.9 %
79 shared markers