SNP Profiles matching OC 67

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	TT	AA	CT	AA
1._OC_67_[VEN]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	TT	AA	CT	AA
2._OC_67_[VEN]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	TT	AA	CT	AA
3._NA	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	TT	AA	CT	AA
4._NA	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	TT	AA	CT	AA
5._NA	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	TT	AA	CT	AA
6._SC_1_[COL]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
7._SC_1_[COL]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
8._SC_1_[COL]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
9._SC_1_[COL]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
10._SC_1_[COL]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
11._SC_1_[COL]	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
12._GC-01-119-6-16	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
13._GC-01-119-6-16	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
14._GC-01-119-6-16	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
15._GC-01-119-6-16	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
16._GC-01-119-6-16	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
17._GC-01-119-6-16	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
18._RUQ_41	AG	_	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
19._SC_1_[COL]	AG	GG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
20._SC_1_[COL]	AG	GG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
21._UF_668	_	CG	CT	TT	AA	CC	CT	_	AA	AA	_	_	CT	_
22._ICS_9	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA
23._NA	AG	CG	CT	TT	AA	CC	CT	CT	AA	AA	CT	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC	GG	GG
1._OC_67_[VEN]	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC	GG	GG
2._OC_67_[VEN]	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC	GG	GG
3._NA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC	GG	GG
4._NA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC	GG	GG
5._NA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC	GG	GG
6._SC_1_[COL]	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
7._SC_1_[COL]	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
8._SC_1_[COL]	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
9._SC_1_[COL]	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
10._SC_1_[COL]	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
11._SC_1_[COL]	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
12._GC-01-119-6-16	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
13._GC-01-119-6-16	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
14._GC-01-119-6-16	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
15._GC-01-119-6-16	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
16._GC-01-119-6-16	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
17._GC-01-119-6-16	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC	AG	GG
18._RUQ_41	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC	AG	GG
19._SC_1_[COL]	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC	AG	GG
20._SC_1_[COL]	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC	AG	GG
21._UF_668	GG	TT	CC	CG	GT	AG	CT	_	CC	_	CT	CC	_	GG
22._ICS_9	GG	TT	CC	_	GT	GG	CT	AC	CC	GT	CT	CC	AG	GG
23._NA	GG	TT	CC	_	GT	GG	CT	AC	CC	GT	CT	CC	AG	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
1._OC_67_[VEN]	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
2._OC_67_[VEN]	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
3._NA	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
4._NA	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
5._NA	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
6._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
7._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
8._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
9._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
10._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
11._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
12._GC-01-119-6-16	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
13._GC-01-119-6-16	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
14._GC-01-119-6-16	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
15._GC-01-119-6-16	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
16._GC-01-119-6-16	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
17._GC-01-119-6-16	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
18._RUQ_41	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
19._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
20._SC_1_[COL]	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
21._UF_668	_	CT	AG	_	AC	_	GT	AC	AT	GG	X_X	X_X	X_X	X_X
22._ICS_9	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
23._NA	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: OC_67_[VEN]

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Mars Center for Cocoa Science, Brazil

Location: 8904 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._OC_67_[VEN]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8904 4

Dapeng Zhang, 2016

2._OC_67_[VEN]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8904 3

Dapeng Zhang, 2016

3._OC_67_[VEN] NA

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._OC_67_[VEN] NA

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._OC_67_[VEN] NA

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._SC_1_[COL]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._SC_1_[COL]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 5

Dapeng Zhang, 2016

8._SC_1_[COL]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 12

Dapeng Zhang, 2016

9._SC_1_[COL]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 13

Dapeng Zhang, 2016

10._SC_1_[COL]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 2 > FP

Dapeng Zhang, 2016

11._SC_1_[COL]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 9 > FP

Dapeng Zhang, 2016

12._SC_1_[COL] GC-01-119-6-16

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

13._SC_1_[COL] GC-01-119-6-16

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._SC_1_[COL] GC-01-119-6-16

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._SC_1_[COL] GC-01-119-6-16

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

16._SC_1_[COL] GC-01-119-6-16

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

17._SC_1_[COL] GC-01-119-6-16

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

18._SC_1_[COL] RUQ_41

91.9 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

19._SC_1_[COL]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C274 T1

Dapeng Zhang, 2016

20._SC_1_[COL]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C319 T2

Dapeng Zhang, 2016

21._UF_668

90.7 %
27 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8 Row 27 31_33

Dapeng Zhang, 2016

22._ICS_9

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8902 6

Dapeng Zhang, 2016

23._ICS_9 NA

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1165	8	TcSNP1144	9	TcSNP1075	10	TcSNP1062
11	TcSNP1060	12	TcSNP998	13	TcSNP994	14	TcSNP953	15	TcSNP929
16	TcSNP917	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25