SNP Profiles matching OC 67 [VEN]

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_Input profile	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
1._OC_67_[VEN]	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
2._NA	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
3._NA	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
4._OC_67_[VEN]	_	AG	CG	CT	TT	AA	CC	_	CT	CT	AA	AA	TT	AA
5._NA	_	AG	CG	CT	TT	AA	CC	_	CT	CT	AA	AA	TT	AA
6._SC_1_[COL]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._SC_1_[COL]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._SC_1_[COL]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._SC_1_[COL]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._SC_1_[COL]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._SC_1_[COL]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._GC-01-119-6-16	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._GC-01-119-6-16	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._GC-01-119-6-16	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._GC-01-119-6-16	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._GC-01-119-6-16	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
17._GC-01-119-6-16	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
18._UF_668	_	_	CG	CT	TT	AA	CC	GT	CT	_	AA	AA	_	_
19._RUQ_41	CT	AG	_	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
20._SC_1_[COL]	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
21._SC_1_[COL]	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
1._OC_67_[VEN]	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
2._NA	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
3._NA	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
4._OC_67_[VEN]	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
5._NA	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
6._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
7._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
8._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
9._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
10._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
11._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
12._GC-01-119-6-16	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
13._GC-01-119-6-16	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
14._GC-01-119-6-16	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
15._GC-01-119-6-16	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
16._GC-01-119-6-16	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
17._GC-01-119-6-16	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
18._UF_668	CT	_	GG	TT	CC	CG	GT	AG	CT	_	CC	_	CT	CC
19._RUQ_41	CT	AA	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC
20._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC
21._SC_1_[COL]	CT	AA	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
1._OC_67_[VEN]	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
2._NA	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
3._NA	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
4._OC_67_[VEN]	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
5._NA	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
6._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
7._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
8._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
9._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
10._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
11._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
12._GC-01-119-6-16	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
13._GC-01-119-6-16	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
14._GC-01-119-6-16	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
15._GC-01-119-6-16	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
16._GC-01-119-6-16	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
17._GC-01-119-6-16	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
18._UF_668	_	GG	_	CT	AG	_	AC	_	GT	AC	AT	GG	X_X	X_X
19._RUQ_41	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
20._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
21._SC_1_[COL]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X

Input profile: OC_67_[VEN]

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Mars Center for Cocoa Science, Brazil

Location: 8904 4

Dapeng Zhang, 2016

1._OC_67_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8904 3

Dapeng Zhang, 2016

2._OC_67_[VEN] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

3._OC_67_[VEN] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._OC_67_[VEN]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8904 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._OC_67_[VEN] NA

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 5

Dapeng Zhang, 2016

8._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 12

Dapeng Zhang, 2016

9._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 13

Dapeng Zhang, 2016

10._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 2 > FP

Dapeng Zhang, 2016

11._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 9 > FP

Dapeng Zhang, 2016

12._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

13._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

16._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

17._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

18._UF_668

91.1 %
28 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8 Row 27 31_33

Dapeng Zhang, 2016

19._SC_1_[COL] RUQ_41

91 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._SC_1_[COL]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C274 T1

Dapeng Zhang, 2016

21._SC_1_[COL]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C319 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25