SNP Profiles of SCA-19   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGTTCCGTCCAACGAGCTAAGGAACCCT
1._SCA_19___
GGTTCCGTCCAACGAGCTAAGGAACCCT
2._SCA_19___
GGTTCCGTCCAACGAGCTAAGGAACCCT
3._SCA_19___
GGTTCCGTCCAACGAGCTAAGGAACCCT
4._SCA_19___
GGTTCCGTCCAACGAGCTAAGGAACCCT
5._SCA_19___
GGTTCCGTCCAACGAGCTAAGGAACCCT
6._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
7._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
8._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
9._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
10._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
11._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
12._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
13._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
14._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
15._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
16._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
17._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
18._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
19._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
20._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
21._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
22._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
23._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
24._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
25._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
26._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
27._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
28._SCA_19___
____CCGGTTCCCCAACTAA__GGAACC
29._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
30._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
31._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
32._SCA_19___
CGAAACGGTTCCCCAACTAAAGGGAACC
33._SCA_19___
CGAAACCCAACCGGAAAGAAAG__AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGAACCAAGTGGCTCCGGAACTAGCC
1._SCA_19___
GGGGAACCAAGTGGCTCCGGAACTAGCC
2._SCA_19___
GGGGAACCAAGTGGCTCCGGAACTAGCC
3._SCA_19___
GGGGAACCAAGTGGCTCCGGAACTAGCC
4._SCA_19___
GGGGAACCAAGTGGCTCCGGAACTAGCC
5._SCA_19___
GGGGAACCAAGTGGCTCCGGAACTAGCC
6._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
7._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
8._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
9._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
10._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
11._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
12._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
13._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
14._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
15._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
16._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
17._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
18._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
19._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
20._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
21._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
22._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
23._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
24._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
25._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
26._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
27._SCA_19___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
28._SCA_19___
GGCCCCTT__GGCCTT________AACC
29._SCA_19___
GGCCCCTTAGGGCCTTCTCCTTCCAACC
30._SCA_19___
GGCCCCTTAGGGCCTTCTCCTTCCAACC
31._SCA_19___
__CCCCTTAAGGCCTTCTCCTTCCAACC
32._SCA_19___
__CCCCTTAAGGCCTTCTCCTTCCAACC
33._SCA_19___
CCCCCCAA__CCGGAAAGCCTTGGAAGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
1._SCA_19___
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
2._SCA_19___
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
3._SCA_19___
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
4._SCA_19___
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
5._SCA_19___
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
6._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
7._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
8._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
9._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
10._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
11._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
12._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
13._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
14._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
15._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
16._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
17._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
18._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
19._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
20._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
21._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
22._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
23._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
24._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
25._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
26._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
27._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
28._SCA_19___
________GG______TTCCAG__X_XX_X
29._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
30._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
31._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
32._SCA_19___
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
33._SCA_19___
GGTT____CCAACCGGAAGGAGGGX_XX_X

Input profile: SCA_19

 
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Mars Center for Cocoa Science, Brazil
Location: 3104 9 > FP
 Dapeng Zhang, 2016

1._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 16
 Dapeng Zhang, 2016

2._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 8
 Dapeng Zhang, 2016

3._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

5._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

6._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 4 > FP
 Dapeng Zhang, 2016

8._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 6 > FP
 Dapeng Zhang, 2016

9._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

14._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 12 > F
 Dapeng Zhang, 2016

15._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

17._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

19._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 15
 Dapeng Zhang, 2016

21._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 14
 Dapeng Zhang, 2016

22._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 13
 Dapeng Zhang, 2016

23._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 10
 Dapeng Zhang, 2016

24._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 7
 Dapeng Zhang, 2016

25._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 5
 Dapeng Zhang, 2016

26._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 2
 Dapeng Zhang, 2016

27._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 1
 Dapeng Zhang, 2016

28._SCA_19 RUQ_46

45.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._SCA_19 RUQ_46

45 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._SCA_19

45 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 748
 Dapeng Zhang, 2016

31._SCA_19 GC-03-004-1-04

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

32._SCA_19

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 11
 Dapeng Zhang, 2016

33._SCA_19 GC-03-4-1-4

22.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 1, Rep: 4, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520