SNP Profiles of "U 12 [PER]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-184-4-27
GGTTAAAACCTTCCTTACGGTTTTGGCC
2. _GC-08-184-4-27
GGTTAAAACCTTCCTTACGGTTTTGGCC
3. _GC-08-184-4-27
GGTTAAAACCTTCCTTACGGTTTTGGCC
4. _GC-08-184-4-27
GGTTAAAACCTTCCTTACGGTTTTGGCC
5. _GC-08-184-4-27
GGTTAAAACCTTCCTTACGGTTTTGGCC
6. _GC-08-185-4-28
GGTTAAAACCTTCCTTACGGTTTTGGCC
7. _GC-08-185-4-28
GGTTAAAACCTTCCTTACGGTTTTGGCC
8. _GC-08-185-4-28
GGTTAAAACCTTCCTTACGGTTTTGGCC
9. _GC-08-185-4-28
GGTTAAAACCTTCCTTACGGTTTTGGCC
10. _GC-08-185-4-28
GGTTAAAACCTTCCTTACGGTTTTGGCC
11. _GC-02-4-1-4
GGAAAAAAGGAACCAAACCCAAAAGGCC
12. _8427_1
GG___AA_______________ACGGTT______CC
13. _8427_2
GG___AA_______________ACGGTT______CC
14. _8427_4
GG___AA_______________ACGGTT______CC
15. _8427_5
GG___AA_______________ACGGTT______CC
16. _8427_7
GG___AA_______________ACGGTT______CC
17. _8428_2
GG___AA_______________ACGGTT______CC
18. _8428_3
GG___AA_______________ACGGTT______CC
19. _8428_4
GG___AA_______________ACGGTT______CC
20. _8428_5
GG___AA_______________ACGGTT______CC
21. _8428_7
GG___AA_______________ACGGTT______CC
22. _UCAYALI12
GG___AA_______________ACGGTT______CC
23. _UCAYALI_12
CG___AT_______________CCGTCT______CC
24. _U_12_Fld#_179_Plt#_5
CGACATAGGGAAACAACCACAGAAGGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-184-4-27
CCAAGGCTTTAAGGAACCAAAGAAGGGG
2. _GC-08-184-4-27
CCAAGGCTTTAAGGAACCAAAGAAGGGG
3. _GC-08-184-4-27
CCAAGGCTTTAAGGAACCAAAGAAGGGG
4. _GC-08-184-4-27
CCAAGGCTTTAAGGAACCAAAGAAGGGG
5. _GC-08-184-4-27
CCAAGGCTTTAAGGAACCAAAGAAGGGG
6. _GC-08-185-4-28
CCAAGGCTTTAAGGAACCAAAGAAGGGG
7. _GC-08-185-4-28
CCAAGGCTTTAAGGAACCAAAGAAGGGG
8. _GC-08-185-4-28
CCAAGGCTTTAAGGAACCAAAGAAGGGG
9. _GC-08-185-4-28
CCAAGGCTTTAAGGAACCAAAGAAGGGG
10. _GC-08-185-4-28
CCAAGGCTTTAAGGAACCAAAGAAGGGG
11. _GC-02-4-1-4
GGAAGGAGAAAAGGAAGGAAAGAACC___
12. _8427_1
CCAA___CT_________AA______AG______GG
13. _8427_2
CCAA___CT_________AA______AG______GG
14. _8427_4
CCAA___CT_________AA______AG______GG
15. _8427_5
CCAA___CT_________AA______AG______GG
16. _8427_7
CCAA___CT_________AA______AG______GG
17. _8428_2
CCAA___CT_________AA______AG______GG
18. _8428_3
CCAA___CT_________AA______AG______GG
19. _8428_4
CCAA___CT_________AA______AG______GG
20. _8428_5
CCAA___CT_________AA______AG______GG
21. _8428_7
CCAA___CT_________AA______AG______GG
22. _UCAYALI12
CCAA___CT_________AA______AG______GG
23. _UCAYALI_12
CCAG___TT_________AT______AA______AG
24. _U_12_Fld#_179_Plt#_5
GGAGGGAGATAAGGATGGAGAAATGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-184-4-27
___CCACCCAGGGGGCGCCCCGGTTAAAA
2. _GC-08-184-4-27
___CCACCCAGGGGGCGCCCCGGTTAAAA
3. _GC-08-184-4-27
___CCACCCAGGGGGCGCCCCGGTTAAAA
4. _GC-08-184-4-27
___CCACCCAGGGGGCGCCCCGGTTAAAA
5. _GC-08-184-4-27
___CCACCCAGGGGGCGCCCCGGTTAAAA
6. _GC-08-185-4-28
___CCACCCAGGGGGCGCCCCGGTTAAAA
7. _GC-08-185-4-28
___CCACCCAGGGGGCGCCCCGGTTAAAA
8. _GC-08-185-4-28
___CCACCCAGGGGGCGCCCCGGTTAAAA
9. _GC-08-185-4-28
___CCACCCAGGGGGCGCCCCGGTTAAAA
10. _GC-08-185-4-28
___CCACCCAGGGGGCGCCCCGGTTAAAA
11. _GC-02-4-1-4
GGCCAC___AGCCGGCGCCGG___AA___AA
12. _8427_1
______ACCC___GG___CGCC______TTAA___
13. _8427_2
______ACCC___GG___CGCC______TTAA___
14. _8427_4
______ACCC___GG___CGCC______TTAA___
15. _8427_5
______ACCC___GG___CGCC______TTAA___
16. _8427_7
______ACCC___GG___CGCC______TTAA___
17. _8428_2
______ACCC___GG___CGCC______TTAA___
18. _8428_3
______ACCC___GG___CGCC______TTAA___
19. _8428_4
______ACCC___GG___CGCC______TTAA___
20. _8428_5
______ACCC___GG___CGCC______TTAA___
21. _8428_7
______ACCC___GG___CGCC______TTAA___
22. _UCAYALI12
______ACCC___GG___CGCC______TTAA___
23. _UCAYALI_12
______ACCT___GT___GGAC______CTAA___
24. _U_12_Fld#_179_Plt#_5
AGAAAC___AAACGGGGACGG___AG___AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-184-4-27
AACCTTGGAATTGGTTCCCCAACCCCTT
2. _GC-08-184-4-27
AACCTTGGAATTGGTTCCCCAACCCCTT
3. _GC-08-184-4-27
AACCTTGGAATTGGTTCCCCAACCCCTT
4. _GC-08-184-4-27
AACCTTGGAATTGGTTCCCCAACCCCTT
5. _GC-08-184-4-27
AACCTTGGAATTGGTTCCCCAACCCCTT
6. _GC-08-185-4-28
AACCTTGGAATTGGTTCCCCAACCCCTT
7. _GC-08-185-4-28
AACCTTGGAATTGGTTCCCCAACCCCTT
8. _GC-08-185-4-28
AACCTTGGAATTGGTTCCCCAACCCCTT
9. _GC-08-185-4-28
AACCTTGGAATTGGTTCCCCAACCCCTT
10. _GC-08-185-4-28
AACCTTGGAATTGGTTCCCCAACCCCTT
11. _GC-02-4-1-4
AA______CCAAAACCAACCGGAAGG___AA
12. _8427_1
_________GG_____________________CC___TT
13. _8427_2
_________GG_____________________CC___TT
14. _8427_4
_________GG_____________________CC___TT
15. _8427_5
_________GG_____________________CC___TT
16. _8427_7
_________GG_____________________CC___TT
17. _8428_2
_________GG_____________________CC___TT
18. _8428_3
_________GG_____________________CC___TT
19. _8428_4
_________GG_____________________CC___TT
20. _8428_5
_________GG_____________________CC___TT
21. _8428_7
_________GG_____________________CC___TT
22. _UCAYALI12
_________GG_____________________CC___TT
23. _UCAYALI_12
_________GT_____________________CG___CT
24. _U_12_Fld#_179_Plt#_5
AA______ACGGAAACAACCCGAGCG___AG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-184-4-27
CCGGCTCCCCTTCCAACCTTCCCCGGGG
2. _GC-08-184-4-27
CCGGCTCCCCTTCCAACCTTCCCCGGGG
3. _GC-08-184-4-27
CCGGCTCCCCTTCCAACCTTCCCCGGGG
4. _GC-08-184-4-27
CCGGCTCCCCTTCCAACCTTCCCCGGGG
5. _GC-08-184-4-27
CCGGCTCCCCTTCCAACCTTCCCCGGGG
6. _GC-08-185-4-28
CCGGCTCCCCTTCCAACCTTCCCCGGGG
7. _GC-08-185-4-28
CCGGCTCCCCTTCCAACCTTCCCCGGGG
8. _GC-08-185-4-28
CCGGCTCCCCTTCCAACCTTCCCCGGGG
9. _GC-08-185-4-28
CCGGCTCCCCTTCCAACCTTCCCCGGGG
10. _GC-08-185-4-28
CCGGCTCCCCTTCCAACCTTCCCCGGGG
11. _GC-02-4-1-4
GGGGAGCCGGTTGGAA___AA___GGGGCC
12. _8427_1
______CTCC___TTCCAA_________CCGG___
13. _8427_2
______CTCC___TTCCAA_________CCGG___
14. _8427_4
______CTCC___TTCCAA_________CCGG___
15. _8427_5
______CTCC___TTCCAA_________CCGG___
16. _8427_7
______CTCC___TTCCAA_________CCGG___
17. _8428_2
______CTCC___TTCCAA_________CCGG___
18. _8428_3
______CTCC___TTCCAA_________CCGG___
19. _8428_4
______CTCC___TTCCAA_________CCGG___
20. _8428_5
______CTCC___TTCCAA_________CCGG___
21. _8428_7
______CTCC___TTCCAA_________CCGG___
22. _UCAYALI12
______CTCC___TTCCAA_________CCGG___
23. _UCAYALI_12
______CCCG___ATCTAG_________CTGG___
24. _U_12_Fld#_179_Plt#_5
GGGGGGCGGGATAGAG___AA___AGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-184-4-27
AATTGGTTCCCCCCTTTTCCTTTT___CC
2. _GC-08-184-4-27
AATTGGTTCCCCCCTTTTCCTTTT___CC
3. _GC-08-184-4-27
AATTGGTTCCCCCCTTTTCC___TT___CC
4. _GC-08-184-4-27
AATTGGTTCCCCCCTTTTCCTTTT___CC
5. _GC-08-184-4-27
AATTGGTTCCCCCCTTTTCCTTTT___CC
6. _GC-08-185-4-28
AATTGGTTCCCCCCTTTTCCTTTT___CC
7. _GC-08-185-4-28
AATTGGTTCCCCCCTTTTCCTTTT___CC
8. _GC-08-185-4-28
AATTGGTTCCCCCCTTTTCCTTTT___CC
9. _GC-08-185-4-28
AATTGGTTCCCCCCTTTTCCTTTT___CC
10. _GC-08-185-4-28
___TTGGTTCCCCCCTTTTCCTTTT___CC
11. _GC-02-4-1-4
AAAAGG______GGGG___AA___AAAAGGCC
12. _8427_1
AA_________CC______TT______TTTT___CC
13. _8427_2
AA_________CC______TT______TTTT___CC
14. _8427_4
AA_________CC______TT_________TT___CC
15. _8427_5
AA_________CC______TT______TTTT___CC
16. _8427_7
AA_________CC______TT______TTTT___CC
17. _8428_2
AA_________CC______TT______TTTT___CC
18. _8428_3
AA_________CC______TT______TTTT___CC
19. _8428_4
AA_________CC______TT______TTTT___CC
20. _8428_5
AA_________CC______TT______TTTT___CC
21. _8428_7
____________CC______TT______TTTT___CC
22. _UCAYALI12
____________CC______TT______TTTT___CC
23. _UCAYALI_12
AT_________CC______CT______GTCT___CC
24. _U_12_Fld#_179_Plt#_5
ATAGGG______AAAG___AC___ACAGAACC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-08-184-4-27
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
2. _GC-08-184-4-27
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
3. _GC-08-184-4-27
GGCCCCTTCCGGCCCC___CCGGCCX_XX_X
4. _GC-08-184-4-27
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
5. _GC-08-184-4-27
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
6. _GC-08-185-4-28
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
7. _GC-08-185-4-28
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
8. _GC-08-185-4-28
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
9. _GC-08-185-4-28
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
10. _GC-08-185-4-28
GGCCCCTTCCGGCCCCAACCGGCCX_XX_X
11. _GC-02-4-1-4
GGGGGGAAGGGGGGCC___CCGGCCX_XX_X
12. _8427_1
___CC___TTCCGGCC_______________X_XX_X
13. _8427_2
___CC___TTCCGGCC_______________X_XX_X
14. _8427_4
___CC___TTCCGGCC_______________X_XX_X
15. _8427_5
___CC___TTCCGGCC_______________X_XX_X
16. _8427_7
___CC___TTCCGGCC_______________X_XX_X
17. _8428_2
___CC___TTCCGGCC_______________X_XX_X
18. _8428_3
___CC___TTCCGGCC_______________X_XX_X
19. _8428_4
___CC___TTCCGGCC_______________X_XX_X
20. _8428_5
___CC___TTCCGGCC_______________X_XX_X
21. _8428_7
___CC___TTCCGGCC_______________X_XX_X
22. _UCAYALI12
___CC___TTCCGGCC_______________X_XX_X
23. _UCAYALI_12
___CT___TTCGAGCC_______________X_XX_X
24. _U_12_Fld#_179_Plt#_5
AGAGGGAACGAAGGAC___ACAGCCX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._U_12_[PER] GC-08-184-4-27
Location: Tree: 1
Notes: 1
 Mars, 2018
2._U_12_[PER] GC-08-184-4-27
Location: Tree: 2
Notes: 2
 Mars, 2018
3._U_12_[PER] GC-08-184-4-27
Location: Tree: 4
Notes: 4
 Mars, 2018
4._U_12_[PER] GC-08-184-4-27
Location: Tree: 5
Notes: 5
 Mars, 2018
5._U_12_[PER] GC-08-184-4-27
Location: Tree: 7
Notes: 7
 Mars, 2018
6._U_12_[PER] GC-08-185-4-28
Location: Tree: 2
Notes: 2
 Mars, 2018
7._U_12_[PER] GC-08-185-4-28
Location: Tree: 3
Notes: 3
 Mars, 2018
8._U_12_[PER] GC-08-185-4-28
Location: Tree: 4
Notes: 4
 Mars, 2018
9._U_12_[PER] GC-08-185-4-28
Location: Tree: 5
Notes: 5
 Mars, 2018
10._U_12_[PER] GC-08-185-4-28
Location: Tree: 7
Notes: 7
 Mars, 2018
11._U_12_[PER] GC-02-4-1-4
Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
12._U_12_[PER]
Location: 8427 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
13._U_12_[PER]
Location: 8427 2
 Dapeng Zhang, 2016
14._U_12_[PER]
Location: 8427 4
 Dapeng Zhang, 2016
15._U_12_[PER]
Location: 8427 5
 Dapeng Zhang, 2016
16._U_12_[PER]
Location: 8427 7
 Dapeng Zhang, 2016
17._U_12_[PER]
Location: 8428 2
 Dapeng Zhang, 2016
18._U_12_[PER]
Location: 8428 3
 Dapeng Zhang, 2016
19._U_12_[PER]
Location: 8428 4
 Dapeng Zhang, 2016
20._U_12_[PER]
Location: 8428 5
 Dapeng Zhang, 2016
21._U_12_[PER]
Location: 8428 7
 Dapeng Zhang, 2016

Universidad Nacional Agraria de la Selva (UNAS) Peru

22._U_12_[PER]
 Dapeng Zhang, 2016

USA108

23._U_12_[PER]
 Dapeng Zhang, 2016

USDA-TARS United States of America

24._U_12_[PER] U 12_Fld#_179_Plt#_5
Location: Field: 179, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133