Genome / Transcriptome

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Library Source: transcriptomic

References / BioProjects 6

1 Baruah I.K., Ali S.S., Shao J., Lary D. & Bailey B.A. (2022): Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection. Frontiers in Plant Science 12: 780805; View More

Reference

Baruah I.K., Ali S.S., Shao J., Lary D. & Bailey B.A. 2022
Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection. Frontiers in Plant Science 12: 780805
Notes

Treated plants were inoculated with zoospores of Phytophthora palmivora and monitored for disease symptom development out to 48 hours. RNA-Seq was carried out on samples 24 h post Phytophthora palmivora inoculation.

DOI: 10.3389/fpls.2021.780805

Accession Data Project Data; BioProject: PRJNA785999 NCBI ENA; Focus of study: disease reaction; Library Source: transcriptomic; BioSamples: 13 3 clones | Runs: 13 | Experiments: 13 | SampleSource: 1
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2 Adriana M. Gallego, Luisa F. Rojas, Wilmar G. Valencia, Lucía Atehortúa, Aura I. Urrea, Andrew S. Fister, Mark J. Guiltinan, Siela N. Maximova & Natalia Pabón-Mora (2021): Transcriptomic analyses of cacao flavonoids produced in photobioreactors. BMC Genomics 22, 551; View More

Reference

Adriana M. Gallego, Luisa F. Rojas, Wilmar G. Valencia, Lucía Atehortúa, Aura I. Urrea, Andrew S. Fister, Mark J. Guiltinan, Siela N. Maximova & Natalia Pabón-Mora 2021
Transcriptomic analyses of cacao flavonoids produced in photobioreactors. BMC Genomics 22, 551
Notes

Transcriptomic analyses of cacao cells cultured in 7.5 L stirred tank photobioreactors (STPs) exposed to a change of white to blue LED lights for 28 days.

DOI: 10.1186/s12864-021-07871-0

Accession Data Project Data; BioProject: PRJNA742476 NCBI ENA; Focus of study: photobioreactors; Library Source: transcriptomic; BioSample: 1 | Runs: 12 | Experiments: 12 | SampleSource: 1
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3 CPCRI (2021): Transcriptome analysis of cocoa pods, infected by Phytophthora palmivora (black pod disease condition).; View More

Reference

CPCRI 2021
Transcriptome analysis of cocoa pods, infected by Phytophthora palmivora (black pod disease condition).
Accession Data Project Data; BioProject: PRJNA604260 NCBI ENA; Focus of study: disease reaction; Library Source: transcriptomic; BioSamples: 3 | Runs: 3 | Experiments: 3 | SampleSource: 1
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4 Fupeng Li, Baoduo Wu, Lin Yan, Xiaowei Qin & Jianxiong Lai (2021): Metabolome and transcriptome profiling of Theobroma cacao provides insights into the molecular basis of pod color variation. Journal of Plant Research 134:1323–1334; View More

Reference

Fupeng Li, Baoduo Wu, Lin Yan, Xiaowei Qin & Jianxiong Lai 2021
Metabolome and transcriptome profiling of Theobroma cacao provides insights into the molecular basis of pod color variation. Journal of Plant Research 134:1323–1334
DOI: 10.1007/s10265-021-01338-9

Fruit Accession Data Project Data; BioProject: PRJNA613342 NCBI ENA; Focus of study: pod colour; Library Source: transcriptomic; BioSamples: 9 3 clones | Runs: 9 | Experiments: 9 | SampleSource: 1
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5 Wuhan University, China (2021): Theobroma cacao Raw sequence reads. NCBI/ERA submission; View More

Reference

Wuhan University, China 2021
Theobroma cacao Raw sequence reads. NCBI/ERA submission
Accession Data Project Data; BioProject: PRJNA714293 NCBI ENA; Focus of study: monoisolate; Library Source: transcriptomic; BioSample: 1 | Runs: 3 | Experiments: 3 | SampleSource: 1
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6 Guiltinan, Mark (2019): Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI; View More

Reference

Guiltinan, Mark 2019
Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI
Notes

A project to establish a new scientific approach for use with perennial crop plants to identify candidate loci for disease resistance using Theobroma cacao. Leaf samples were collected from the La Montaña field site at the CATIE field station in Turrialba, Costa Rica. The study focused on four genetic groups (Guiana, Iquitos, Marañon, and Nanay) and variation in resistance to Phytophthora.
Last updated: November, 2022

plantscience.psu.edu/…

Disease Population Accession Data Project Data; BioProject: PRJNA558793 NCBI ENA; Focus of study: disease reaction; Library Source: genomic; BioSamples: 31 31 clones | Runs: 134 | Experiments: 134 | SampleSource: 1; Library Source: transcriptomic; BioSamples: 31 31 clones | Runs: 31 | Experiments: 31 | SampleSource: 1
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Plants 36

1 AMAZ 12 View

2 AMAZ 15 /15 View

3 CCN 51 View

4 COCA 3370 /5 [CHA] View

5 ELP 37 A View

6 GU 123 /V View

7 GU 195 /V View

8 GU 257 /E View

9 ICS 1 View

10 IMC 31 View

11 IMC 57 View

12 IMC 60 View

13 IMC 105 View

14 KER 1-L View

15 KER 6 View

16 NA 33 View

17 NA 34 View

18 NA 70 View

19 NA 246 View

20 NA 710 View

21 NA 807 View

22 NA 916 View

23 OYA 2 B View

24 PA 13 [PER] View

25 PA 16 [PER] View

26 PA 71 [PER] View

27 PA 81 [PER] View

28 PA 107 [PER] View

29 PA 279 [PER] View

30 PA 299 [PER] View

31 PINA 1 View Synonyms: PINA

32 POUND 7 View

33 SPEC 54 /1 View

34 TAS 166 View

35 TAS 168 View

36 TAS 410 View